| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028699 |
| Family | CE8 |
| Protein Properties | Length: 364 Molecular Weight: 39569.5 Isoelectric Point: 9.2706 |
| Chromosome | Chromosome/Scaffold: 02 Start: 2499131 End: 2500879 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 70 | 350 | 0 |
| NPKGGEFKTLTDALKSIPEKNTKRVIIKMAPGEYKEKVTIDKKKPFITLMGDPKAMPVLTYDGTAAQYGTVNSASLIILSDYFIAVNIIVKNSAPKPDGK RKGAQALAMRISGNNAAFYNCKFHGFQDTLCDDAGNHFFKDCYIEGTFDFIFGSGTSMYLDTQLHAVGDGIKVISAHAGKSAEEKSGYSFVHCKVTGDGG GIYLGRSWKSHPKVVYAYTEMSSLVNPTGWKANKVAAHDKTVFYGEYKCTGPGSHTAKRVPFTQDIDENEANRFLSLGYIK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 364 Download |
| MGYIHVSMLL AMVMVFVTPM VLADDNTPIP EAKPQAEQWF KTNVAPLPSR KGLDPALVAA 60 EASPRTINVN PKGGEFKTLT DALKSIPEKN TKRVIIKMAP GEYKEKVTID KKKPFITLMG 120 DPKAMPVLTY DGTAAQYGTV NSASLIILSD YFIAVNIIVK NSAPKPDGKR KGAQALAMRI 180 SGNNAAFYNC KFHGFQDTLC DDAGNHFFKD CYIEGTFDFI FGSGTSMYLD TQLHAVGDGI 240 KVISAHAGKS AEEKSGYSFV HCKVTGDGGG IYLGRSWKSH PKVVYAYTEM SSLVNPTGWK 300 ANKVAAHDKT VFYGEYKCTG PGSHTAKRVP FTQDIDENEA NRFLSLGYIK GSSWLLPPPG 360 FKV* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 3.0e-81 | 67 | 355 | 290 | + putative pectinesterase | ||
| PLN02304 | PLN02304 | 4.0e-82 | 66 | 357 | 302 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 4.0e-88 | 65 | 357 | 306 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 2.0e-102 | 65 | 357 | 302 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 1 | 361 | 365 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52566.1 | 0 | 20 | 361 | 1 | 338 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
| GenBank | AAM65347.1 | 0 | 20 | 361 | 1 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| EMBL | CAB87930.1 | 0 | 20 | 361 | 1 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_177152.2 | 0 | 1 | 361 | 1 | 361 | PPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_568181.1 | 0 | 1 | 361 | 1 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 1e-39 | 64 | 355 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-35 | 74 | 355 | 13 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 2e-17 | 67 | 286 | 35 | 276 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 1e-16 | 73 | 233 | 15 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 1e-16 | 73 | 233 | 15 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
