| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028964 |
| Family | GH14 |
| Protein Properties | Length: 533 Molecular Weight: 60260.9 Isoelectric Point: 8.3528 |
| Chromosome | Chromosome/Scaffold: 03 Start: 5616759 End: 5619484 |
| Description | beta-amylase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 96 | 521 | 0 |
| YVMMPIDTFGIDSSGCPIIKRLKALTVSLKALKLAGVHGVAVEVWWGIVERFCPLEFKWSLYDELFRLISEAGLKLHVALCFHSNMHLFRGKGGVSLPLW IREIGEVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSKNFEPYFGNLIEEISIGLGPSGELRYPAHPLGDGRWTFPGIGEFQCHD KYMMEDLMAVASQEGKPQWGSRDLPNAGCYNSFPSGVPFFEEGHDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQEEEKSSVMLVAKIGGIYW WYKTSSHPAELTAGYYNTALRDGYDPLASVLSRHGAALHIPCLDMADSETPEKYLCSPEGLLRQIHDVSKKRTIQVTGRNTSERYDVMGLRQIRENCVQP NGETVRSFTFFRMNEKIFRVENWNNF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 533 Download |
| MAEIGGIGCG CRGVSGGNFF HPGGFSLKSC FLEQQRTRRN RNFFRNVSIV PSFKRGRLIT 60 KWSSVAGNSP IFSMDARENS RSFVLVSSRH RKVPVYVMMP IDTFGIDSSG CPIIKRLKAL 120 TVSLKALKLA GVHGVAVEVW WGIVERFCPL EFKWSLYDEL FRLISEAGLK LHVALCFHSN 180 MHLFRGKGGV SLPLWIREIG EVNKDIYYRD KNGFSNNDYL TLGVDQLPLF GGRTAVQCYE 240 DFMLSFSKNF EPYFGNLIEE ISIGLGPSGE LRYPAHPLGD GRWTFPGIGE FQCHDKYMME 300 DLMAVASQEG KPQWGSRDLP NAGCYNSFPS GVPFFEEGHD SFLSDYGRFF LEWYSGKLIC 360 HADAILAKAA DVLRRRQEEE KSSVMLVAKI GGIYWWYKTS SHPAELTAGY YNTALRDGYD 420 PLASVLSRHG AALHIPCLDM ADSETPEKYL CSPEGLLRQI HDVSKKRTIQ VTGRNTSERY 480 DVMGLRQIRE NCVQPNGETV RSFTFFRMNE KIFRVENWNN FVPFVRQMSA DV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 8.0e-103 | 93 | 531 | 446 | + beta-amylase | ||
| PLN00197 | PLN00197 | 7.0e-134 | 93 | 528 | 443 | + beta-amylase; Provisional | ||
| PLN02801 | PLN02801 | 2.0e-139 | 93 | 531 | 455 | + beta-amylase | ||
| PLN02803 | PLN02803 | 2.0e-147 | 71 | 529 | 465 | + beta-amylase | ||
| PLN02161 | PLN02161 | 0 | 1 | 532 | 532 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76508.1 | 0 | 49 | 532 | 1 | 484 | putative beta-amylase [Arabidopsis thaliana] |
| GenBank | AAK84008.1 | 0 | 87 | 529 | 77 | 508 | AF393847_1 beta-amylase PCT-BMYI [Solanum tuberosum] |
| DDBJ | BAH20280.1 | 0 | 35 | 532 | 1 | 498 | AT5G55700 [Arabidopsis thaliana] |
| RefSeq | NP_568829.2 | 0 | 1 | 532 | 1 | 531 | BAM4 (BETA-AMYLASE 4); beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
| RefSeq | XP_002265698.1 | 0 | 1 | 532 | 1 | 522 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1v3i_A | 0 | 93 | 531 | 12 | 444 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1q6d_A | 0 | 93 | 531 | 12 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
| PDB | 1wdr_A | 0 | 93 | 531 | 12 | 444 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| PDB | 1wds_A | 0 | 93 | 531 | 12 | 444 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
| PDB | 1wdp_A | 0 | 93 | 531 | 12 | 444 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EV096717 | 235 | 116 | 350 | 0 |
| EE465458 | 241 | 245 | 485 | 0 |
| FY454531 | 263 | 19 | 277 | 0 |
| ES906343 | 241 | 18 | 258 | 0 |
| EV107336 | 225 | 309 | 533 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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