| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028988 |
| Family | CBM43 |
| Protein Properties | Length: 576 Molecular Weight: 62050.4 Isoelectric Point: 8.4836 |
| Chromosome | Chromosome/Scaffold: 03 Start: 5733661 End: 5742829 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 487 | 570 | 8.6e-33 |
| WCVANGKTTREKLQEALDYACGEGGADCRSIQKGATCYDPESLEAHASYAFNSYYQKNARGVGTCNFGGAAYVVSQPPKYGKCE | |||
| GH17 | 142 | 461 | 0 |
| IGVNYGRIADNLPAPEKVVELLKSQGINRVKLFDTDKTVLTALANSGIKVVVSLPNENLTAAAADQSYTDKWVQENVKKYTPATDIEAIAVGNEVFVDPK NTTKYLVAAMTNVQSSLVKFNLDKSVKISSPIALSALANSYPPSAGSFKPDLIEPVIKPMLDLLRKTSSHLMVNAYPFFAYAANADKIPLDYALFRENAG NVDSGNGLKYNSLFDAQIDAVYAAMAAVGFNDVKLVVTETGWPSAGDENEIGAGSANAAAYNGGLVKRVLTGNGTPLKPNEPLNVYLFALFNENQKTGPT SERNYGLFYPNENKVYDVPF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 576 Download |
| MAQLMKLLVT IALTFAITTA IITTRTTRTN PKTETFAVKD LRSPGTVKIK PGRFLAQKDE 60 GGQGPKARNP SATNRCNKDS EICRSTEANP RMACCNNKCM DLLTDKKNCG ACNKKCKYTE 120 TCCGGQCANL NYNKRHCDSG MIGVNYGRIA DNLPAPEKVV ELLKSQGINR VKLFDTDKTV 180 LTALANSGIK VVVSLPNENL TAAAADQSYT DKWVQENVKK YTPATDIEAI AVGNEVFVDP 240 KNTTKYLVAA MTNVQSSLVK FNLDKSVKIS SPIALSALAN SYPPSAGSFK PDLIEPVIKP 300 MLDLLRKTSS HLMVNAYPFF AYAANADKIP LDYALFRENA GNVDSGNGLK YNSLFDAQID 360 AVYAAMAAVG FNDVKLVVTE TGWPSAGDEN EIGAGSANAA AYNGGLVKRV LTGNGTPLKP 420 NEPLNVYLFA LFNENQKTGP TSERNYGLFY PNENKVYDVP FSATVTPVSD SKVKVPVNTP 480 SHVGQTWCVA NGKTTREKLQ EALDYACGEG GADCRSIQKG ATCYDPESLE AHASYAFNSY 540 YQKNARGVGT CNFGGAAYVV SQPPKYGKCE FPTGH* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0006 | 161 | 452 | 300 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam04885 | Stig1 | 2.0e-20 | 39 | 137 | 100 | + Stigma-specific protein, Stig1. This family represents the Stig1 cysteine rich plant protein. The STIG1 gene is developmentally regulated and expressed specifically in the stigmatic secretory zone. | ||
| pfam07983 | X8 | 2.0e-23 | 486 | 558 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-36 | 486 | 571 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-90 | 142 | 461 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL77689.1 | 0 | 136 | 575 | 21 | 460 | AT5g55180/MCO15_13 [Arabidopsis thaliana] |
| GenBank | AAM66024.1 | 0 | 136 | 575 | 21 | 460 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| DDBJ | BAB08587.1 | 0 | 136 | 564 | 21 | 449 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001154780.1 | 0 | 136 | 564 | 21 | 449 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_568822.1 | 0 | 136 | 575 | 21 | 460 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 142 | 461 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 142 | 461 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 0 | 142 | 461 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 142 | 462 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 142 | 462 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
