| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra029151 |
| Family | AA3 |
| Protein Properties | Length: 583 Molecular Weight: 63747.7 Isoelectric Point: 7.7541 |
| Chromosome | Chromosome/Scaffold: 03 Start: 6579785 End: 6582297 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 36 | 579 | 0 |
| DAKLAPMFARFDYIIIGGGTSGCALAATLSQNASVLVLERGGSPYENPAATDIGNFATTLSNTSPKSWSQLFISEDGVYNTRARVLGGGSVLNAGFYTRA GDDYVKEAEWESGEVEAAYEWVEEKVAFQPPVMGWQTALKDGLLEAGEFPYNGFTYDHINGTKIGATIFDQAGHRHTAANLLEHANPDTLAVYLHATVHK ILFTTKGRPRPKAYGVIFQDANGVLHKAELAKIATNEVILSAGAIGSPQLLMLSGVGPMAHLTAHKIKPVVLDHPTVGQGMGDNPMNAIFIPSPTPVEVS LIQVVGITKHNSYIEGASGVIISYSWTRNYFDGVLNYLNETSRTNTSTTFSTQSITDFFKSIHPLLSATTKAGLILQKVAGPVSRGHLELRNTNPNDNPS VRFNYYQEPEDLKKCVEGITTIIKVINSKAFAKFKYPDGTIHGLLDLILSIPTNLRPRHVTSVFDLRQFCIDTVMTIWHYHGGCQVGRVVDKNYKVLGID GLRVIDGSTFLKSPGTNPQATVMMLGRYMGQKILRERGAFHKKD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 583 Download |
| MSFQTLWLFR IVLIVTFISH ASCFPDQAGY YSFTKDAKLA PMFARFDYII IGGGTSGCAL 60 AATLSQNASV LVLERGGSPY ENPAATDIGN FATTLSNTSP KSWSQLFISE DGVYNTRARV 120 LGGGSVLNAG FYTRAGDDYV KEAEWESGEV EAAYEWVEEK VAFQPPVMGW QTALKDGLLE 180 AGEFPYNGFT YDHINGTKIG ATIFDQAGHR HTAANLLEHA NPDTLAVYLH ATVHKILFTT 240 KGRPRPKAYG VIFQDANGVL HKAELAKIAT NEVILSAGAI GSPQLLMLSG VGPMAHLTAH 300 KIKPVVLDHP TVGQGMGDNP MNAIFIPSPT PVEVSLIQVV GITKHNSYIE GASGVIISYS 360 WTRNYFDGVL NYLNETSRTN TSTTFSTQSI TDFFKSIHPL LSATTKAGLI LQKVAGPVSR 420 GHLELRNTNP NDNPSVRFNY YQEPEDLKKC VEGITTIIKV INSKAFAKFK YPDGTIHGLL 480 DLILSIPTNL RPRHVTSVFD LRQFCIDTVM TIWHYHGGCQ VGRVVDKNYK VLGIDGLRVI 540 DGSTFLKSPG TNPQATVMML GRYMGQKILR ERGAFHKKDE EA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 3.0e-15 | 417 | 569 | 158 | + choline dehydrogenase; Validated | ||
| pfam05199 | GMC_oxred_C | 6.0e-27 | 417 | 561 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| PRK02106 | PRK02106 | 4.0e-32 | 45 | 318 | 326 | + choline dehydrogenase; Validated | ||
| COG2303 | BetA | 1.0e-44 | 40 | 574 | 591 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 16 | 572 | 558 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB11043.1 | 0 | 1 | 562 | 1 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB87405.1 | 0 | 1 | 562 | 1 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001119417.1 | 0 | 35 | 582 | 2 | 553 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_200008.1 | 0 | 1 | 582 | 1 | 586 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567032.1 | 0 | 1 | 581 | 1 | 576 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ju2_B | 0 | 30 | 574 | 11 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 1ju2_A | 0 | 30 | 574 | 11 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_B | 0 | 30 | 574 | 11 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_A | 0 | 30 | 574 | 11 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdn_B | 0 | 30 | 574 | 11 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
