| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra029170 |
| Family | CE8 |
| Protein Properties | Length: 528 Molecular Weight: 58344.7 Isoelectric Point: 9.2521 |
| Chromosome | Chromosome/Scaffold: 03 Start: 6677370 End: 6679280 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 213 | 511 | 0 |
| LVVAKDGSGHVTTVQAAIDVAGRRKVTSGRFIIYVKRGVYEENINVRRNNDNIMLVGDGMRSTIITGYRRVKDGYTTYNSATAGIEGLHFIAKGLTFRNT AGPAKGQAVALRSSSDLSIFYQCSIEGYQDTLLVHSQRQFYRECYIYGTVDFIFGNAAAVFQNCLILPRRPLEGQANVITAQARAYPFQNTGISIHNSTI LPAPDLIPVIGNVKTYMGRPWMKYSRTVVLQTYLDSVVCPLGWSPWLKGSDFGLDTLFYAEYNNIGPASSTSGRVRWKGFHVLNRASDASAFTVGSFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 528 Download |
| MMHKISYLLR LLLPFLLCLH LLTTVSGIDQ WCYKTPYPDP CKRYFINRND FRPPTQLSDF 60 RVMLVEAAMH RAISARDALA SSSLNCTDGQ KQAVFGDCID LYGDTIMQLN RTLKCMSPKA 120 SCTDFDAQTW LSTALTNTET CRHGTTDFNV SDFITPIVSK TEISNLMSNC LAVNGALLTA 180 ANNGNRKDFP TWVSGKERRL LQSQSERAVR ANLVVAKDGS GHVTTVQAAI DVAGRRKVTS 240 GRFIIYVKRG VYEENINVRR NNDNIMLVGD GMRSTIITGY RRVKDGYTTY NSATAGIEGL 300 HFIAKGLTFR NTAGPAKGQA VALRSSSDLS IFYQCSIEGY QDTLLVHSQR QFYRECYIYG 360 TVDFIFGNAA AVFQNCLILP RRPLEGQANV ITAQARAYPF QNTGISIHNS TILPAPDLIP 420 VIGNVKTYMG RPWMKYSRTV VLQTYLDSVV CPLGWSPWLK GSDFGLDTLF YAEYNNIGPA 480 SSTSGRVRWK GFHVLNRASD ASAFTVGSFI AGTAWLPGTG IPFNSGL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 8.0e-144 | 32 | 527 | 514 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-153 | 88 | 527 | 443 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 1.0e-153 | 103 | 527 | 455 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 1.0e-171 | 212 | 512 | 301 | + Pectinesterase. | ||
| PLN02995 | PLN02995 | 0 | 26 | 527 | 510 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_199962.1 | 0 | 18 | 527 | 22 | 536 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_199963.1 | 0 | 26 | 527 | 36 | 540 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002264861.1 | 0 | 1 | 527 | 1 | 523 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
| RefSeq | XP_002322402.1 | 0 | 23 | 527 | 25 | 524 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002510939.1 | 0 | 26 | 527 | 29 | 526 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 209 | 527 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 211 | 527 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 4e-22 | 208 | 488 | 1 | 318 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 4e-22 | 208 | 488 | 1 | 318 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 4e-22 | 208 | 488 | 1 | 318 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
