| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra029200 |
| Family | GH35 |
| Protein Properties | Length: 721 Molecular Weight: 79894.1 Isoelectric Point: 8.2265 |
| Chromosome | Chromosome/Scaffold: 02 Start: 26565964 End: 26571294 |
| Description | Glycosyl hydrolase family 35 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 40 | 344 | 0 |
| LIIDGQRKLLFSGSIHYPRSTPEMWPSLIKKTKEGGIDVIQTYVFWNLHEPKLGQYDFSGRNDLVKFIKEIRSQGLYVCLRIGPFVEAEWNYGGLPFWLR DVPGMVYRTDNEPFKFHMQRFTSKIVNLMKSEGLYASQGGPIILSQIENEYGNVEAGFHEKGASYVKWAAQMAVGLQTGVPWIMCKQPDAPDPVINTCNG MRCGETFPGPNSPNKPKMWTEDWTSFYQFYGGEPYIRSAEDIAFHAALFIAKNGSYINYYMYHGGTNFGRTSSSYFITGYYDQAPLDEYGLLRQPKYGHL KELHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 721 Download |
| MMSGRVASCW ILVAMVVVLS TASAGGDTAE KGVTYDGRSL IIDGQRKLLF SGSIHYPRST 60 PEMWPSLIKK TKEGGIDVIQ TYVFWNLHEP KLGQYDFSGR NDLVKFIKEI RSQGLYVCLR 120 IGPFVEAEWN YGGLPFWLRD VPGMVYRTDN EPFKFHMQRF TSKIVNLMKS EGLYASQGGP 180 IILSQIENEY GNVEAGFHEK GASYVKWAAQ MAVGLQTGVP WIMCKQPDAP DPVINTCNGM 240 RCGETFPGPN SPNKPKMWTE DWTSFYQFYG GEPYIRSAED IAFHAALFIA KNGSYINYYM 300 YHGGTNFGRT SSSYFITGYY DQAPLDEYGL LRQPKYGHLK ELHAAIKSSA NPLLHGKQTV 360 LSLGPMQQAY VFEDENSGCV AFLVNNDARK AIQMQFRNNA YSLLPKSIGI LQDCKTLIYE 420 TAKVNVAKNM RVTTPVQVFN VPDKWEVFRE SIPAFSDTPL KTNSLLEHTN LTKDKTDYLW 480 YTLRFESSSP CANPSLYIES LGHVVHVFVN NALAGSGHGS RNITVVKLQV PVSLINGQNN 540 ISILSGMVGL PDSGAYMERK SYGLTKAQIS CGETNAIDLS GSQWGHLVGL LGDKVRLHQW 600 ANLKSVKRST NDAGLIKNCP LAWYKTMFDE PSGDGPVGLN MGSMGKGEVW VNGQRIGRYW 660 VSFLTPSGHP SQSIYHIPRA FLKPSGNLLV VFEEEGGDPL GISLNTISVI GSNQAQSQFS 720 * 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13364 | BetaGal_dom4_5 | 0.0003 | 456 | 551 | 102 | + Beta-galactosidase jelly roll domain. This domain is found in beta galactosidase enzymes. It has a jelly roll fold. | ||
| pfam02449 | Glyco_hydro_42 | 6.0e-6 | 55 | 191 | 151 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| COG1874 | LacA | 2.0e-24 | 33 | 364 | 376 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 3.0e-158 | 39 | 346 | 322 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 7 | 704 | 727 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF01618.1 | 0 | 1 | 720 | 1 | 718 | beta-galactosidase like protein [Arabidopsis thaliana] |
| EMBL | CAB64742.1 | 0 | 1 | 720 | 1 | 718 | putative beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_568978.2 | 0 | 1 | 720 | 1 | 718 | MUM2 (MUCILAGE-MODIFIED 2); beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | XP_002274012.1 | 0 | 33 | 708 | 62 | 735 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002307056.1 | 0 | 10 | 719 | 7 | 711 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 7e-40 | 39 | 342 | 14 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.003 | 622 | 696 | 509 | 575 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 3e-29 | 33 | 342 | 11 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 3e-29 | 33 | 342 | 11 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
