| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra029607 |
| Family | CE8 |
| Protein Properties | Length: 570 Molecular Weight: 62744.5 Isoelectric Point: 9.6169 |
| Chromosome | Chromosome/Scaffold: 05 Start: 23026033 End: 23028243 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 258 | 552 | 0 |
| NVAVAQDGSGHFKTITDALKVVPKNNRMPFIIHIKEGIYKERVKVTKKMAYVTFIGDGPNKTKITGNLNFGIGKVKTFLTSTLTIEGEHFTAKNIGIENT AGRKGGQAVALRVSADYAVFYSCQIDGYQDTLYVHSQRQFYRDCTVSGTVDFIFGDAKCILQNCNIVVRKPKRGQSCMVTAQGRSDVRESTGLVLHNCHI MGDPAYIRVKSVNKAYLGRPWKEFSRTIIMKTTIDDVIDPAGWLPWKGDFALKTLYYAEHLNAGPGSNEALRVKWPGIKKLSPEEALLYTGGRFL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 570 Download |
| MTVDGDKKKK CLIAGSVSGL LVIMVVSVAV VTSKHTPNEN QIRTTTKAVR AVCAPTDFKE 60 ACVKSLMDAS PNSTEPLELI KLSFNATIKS INDNLKKASE DVKPKADKDP GAKGAFQLCE 120 RLMIDAIDDL KKCVDREFSV TQIEIFVEDL RVWLSGSIAF QQTCIDTFEE IKSNLKRDML 180 NIFKSSRELS SNSLAMTTDL PTILPNSNIT GLTGALAKYA RKLLYTEDGI PTWVGPHARR 240 LMQAEPKPKG GGPPVKANVA VAQDGSGHFK TITDALKVVP KNNRMPFIIH IKEGIYKERV 300 KVTKKMAYVT FIGDGPNKTK ITGNLNFGIG KVKTFLTSTL TIEGEHFTAK NIGIENTAGR 360 KGGQAVALRV SADYAVFYSC QIDGYQDTLY VHSQRQFYRD CTVSGTVDFI FGDAKCILQN 420 CNIVVRKPKR GQSCMVTAQG RSDVRESTGL VLHNCHIMGD PAYIRVKSVN KAYLGRPWKE 480 FSRTIIMKTT IDDVIDPAGW LPWKGDFALK TLYYAEHLNA GPGSNEALRV KWPGIKKLSP 540 EEALLYTGGR FLVGDTWIPQ TQVPYSANM* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 1.0e-155 | 37 | 565 | 530 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02990 | PLN02990 | 0 | 1 | 569 | 578 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 258 | 555 | 299 | + Pectinesterase. | ||
| PLN02217 | PLN02217 | 0 | 4 | 565 | 568 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02745 | PLN02745 | 0 | 32 | 564 | 539 | + Putative pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF63815.1 | 0 | 33 | 569 | 33 | 562 | pectin methylesterase, putative [Arabidopsis thaliana] |
| DDBJ | BAC42959.2 | 0 | 33 | 567 | 33 | 566 | putative pectin methylesterase [Arabidopsis thaliana] |
| RefSeq | NP_187339.2 | 0 | 33 | 569 | 33 | 568 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_199729.1 | 0 | 41 | 569 | 47 | 570 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002314364.1 | 0 | 41 | 569 | 52 | 568 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 255 | 569 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 257 | 565 | 3 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 2e-28 | 269 | 500 | 18 | 279 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-28 | 269 | 500 | 18 | 279 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-28 | 269 | 559 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
