| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra029614 |
| Family | PL1 |
| Protein Properties | Length: 406 Molecular Weight: 44982 Isoelectric Point: 8.8053 |
| Chromosome | Chromosome/Scaffold: 05 Start: 22976256 End: 22980347 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 129 | 324 | 0 |
| VIQNEPLWIVFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACLTIQYVTNIIVHGIHIHDCKPTGNAMVRSSPSHYGWRSMADGEAISIFGSSHIWI DHNSLSNCADGLVDAVMSSTAITVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 406 Download |
| MAVTKLIFFA SALLVTTLFI GVNSSRSNET WHEHAVEKPE EVAAMVDMSI RNSTERRRLG 60 YFSCATGNPI DDCWRCDRKW QLRRKRLADC SIGFGRNAIG GRDGRYYVVT DPNDDDPVTP 120 VPGTLRHAVI QNEPLWIVFK RDMVITLKEE LIMNSFKTID GRGVNVHIAN GACLTIQYVT 180 NIIVHGIHIH DCKPTGNAMV RSSPSHYGWR SMADGEAISI FGSSHIWIDH NSLSNCADGL 240 VDAVMSSTAI TVMLLGHSDS YTRDKVMQVT IAYNHFGEGL IQRMPRCRHG YFHVVNNDYT 300 HWEMYAIGGS AGPTINSQGN RFLAPVNPFA KEVTKREYTG QSKWKHWNWR SEGDLFLNGA 360 FFTRSGAGAG AGYARASSLS AKSSSLVGTM TSYSGALNCR AGRRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-20 | 155 | 322 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-62 | 148 | 322 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-71 | 142 | 325 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61584.1 | 0 | 1 | 405 | 1 | 416 | putative pectate lyase [Arabidopsis thaliana] |
| GenBank | AAM63307.1 | 0 | 1 | 405 | 1 | 417 | pectate lyase [Arabidopsis thaliana] |
| DDBJ | BAB10313.1 | 0 | 24 | 405 | 2 | 393 | pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_187357.1 | 0 | 1 | 405 | 1 | 416 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568705.1 | 0 | 1 | 405 | 1 | 417 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 68 | 366 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 68 | 366 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.0000000000001 | 137 | 324 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000001 | 158 | 322 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3krg_A | 0.0000002 | 158 | 299 | 130 | 295 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
