| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra029639 |
| Family | CBM43 |
| Protein Properties | Length: 461 Molecular Weight: 50524.8 Isoelectric Point: 8.8113 |
| Chromosome | Chromosome/Scaffold: 05 Start: 22863544 End: 22865110 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 371 | 454 | 2.5e-27 |
| WCVVAKGANWTQLGDALSYACSQGNNTCDPIKPGGSCHKPDLMVFHASYAFSSYWASFRKVGGTCYFNGLATQTIKDPGYGRCE | |||
| GH17 | 25 | 345 | 0 |
| GVNYGQLGNNLPSPSDSVTLIKSLNAKSVKLYDANPSILAALNATDIVVSVMVPNELIVNITKSKTLSDDWIKSNVLPFYPSTKIRYLLVGNEILSSQDS ELKSALVPAMRKIQRSLKTLGVKKVKVGTTLAMDVLNSSYPPSSGEFRSDISGSVMKPMLQFLNRTKSFLFVDVYPYFAWAQDPAHINLDYAIFESTNVT VMDPVTNLTYHNLFDQMIDAFVFAMKRLGYPDLRIWVAETGWPNNGDYDQIGANIYNAATYNRNVVKKLAAEPPVGTPARPGKVLPSFIFALYNENQKTG PGTERHFGLLHPNGSQVYEIE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 461 Download |
| MSVLHLLTLS LLISISGAKF SGRPGVNYGQ LGNNLPSPSD SVTLIKSLNA KSVKLYDANP 60 SILAALNATD IVVSVMVPNE LIVNITKSKT LSDDWIKSNV LPFYPSTKIR YLLVGNEILS 120 SQDSELKSAL VPAMRKIQRS LKTLGVKKVK VGTTLAMDVL NSSYPPSSGE FRSDISGSVM 180 KPMLQFLNRT KSFLFVDVYP YFAWAQDPAH INLDYAIFES TNVTVMDPVT NLTYHNLFDQ 240 MIDAFVFAMK RLGYPDLRIW VAETGWPNNG DYDQIGANIY NAATYNRNVV KKLAAEPPVG 300 TPARPGKVLP SFIFALYNEN QKTGPGTERH FGLLHPNGSQ VYEIELSGKT TEYKEALPGP 360 ENNEGYKGKI WCVVAKGANW TQLGDALSYA CSQGNNTCDP IKPGGSCHKP DLMVFHASYA 420 FSSYWASFRK VGGTCYFNGL ATQTIKDPGY GRCEFPSVTL * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 5.0e-12 | 371 | 442 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-25 | 371 | 455 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-105 | 25 | 344 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF20214.1 | 0 | 13 | 460 | 14 | 440 | AC012395_1 putative beta-1,3-glucanase precursor [Arabidopsis thaliana] |
| GenBank | AAM65039.1 | 0 | 13 | 460 | 14 | 460 | putative glucan endo-1-3-beta-glucosidase [Arabidopsis thaliana] |
| EMBL | CBI39470.1 | 0 | 6 | 460 | 11 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_683538.1 | 0 | 13 | 460 | 14 | 460 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002334812.1 | 0 | 1 | 460 | 4 | 465 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 25 | 346 | 2 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 25 | 346 | 2 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 25 | 347 | 3 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 25 | 347 | 3 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
