Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra029682 |
Family | GH28 |
Protein Properties | Length: 477 Molecular Weight: 47760.8 Isoelectric Point: 8.1995 |
Chromosome | Chromosome/Scaffold: 05 Start: 22679010 End: 22680714 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 124 | 457 | 0 |
KTACEAPGPSTITVPKGDYLVNNIEFLGPCKGPVTFEMSGNMKAPATVAAVKPNSGWVDFTNLADFTLNGNGAIFDGQGSLAWKANDCAKTGKCNSLPIN IRFTGLTNSKIIGITSTNSKLFHMNVLNCKNVTLENIGIDAPPESLNTDGIHIGRSVGVNLIGAKVKTGDDCVSIGDGTENLIVENVECGPGHGIAVGSL GRYPNEQPVRGVTVRKCLIKNTSNGVRIKTWPGSPPGIASNIIFEDITMDNVSTPILIDQEYCPYADCKAGVPSKVKLSDVTFKNIKGTSATKTAVKLIC SVGTPCTNVALANINLVHNGPEGPAVGACANMKP |
Full Sequence |
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Protein Sequence Length: 477 Download |
MVGLRRAKTV LLVLVVVISN TIADGAPLDR GPKGSVAAAP LGATVPGGGN AAAPVGAATT 60 APAGAKGSPA AAPVGATAPA AAAGGLAAAP AGAAGAAGSL DVKAAGAKGD GTTDDTAAFT 120 AVWKTACEAP GPSTITVPKG DYLVNNIEFL GPCKGPVTFE MSGNMKAPAT VAAVKPNSGW 180 VDFTNLADFT LNGNGAIFDG QGSLAWKAND CAKTGKCNSL PINIRFTGLT NSKIIGITST 240 NSKLFHMNVL NCKNVTLENI GIDAPPESLN TDGIHIGRSV GVNLIGAKVK TGDDCVSIGD 300 GTENLIVENV ECGPGHGIAV GSLGRYPNEQ PVRGVTVRKC LIKNTSNGVR IKTWPGSPPG 360 IASNIIFEDI TMDNVSTPIL IDQEYCPYAD CKAGVPSKVK LSDVTFKNIK GTSATKTAVK 420 LICSVGTPCT NVALANINLV HNGPEGPAVG ACANMKPVLT GQMIPPACTE IAKPGP* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-69 | 119 | 439 | 325 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-77 | 119 | 468 | 356 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-79 | 119 | 468 | 351 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-104 | 127 | 456 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-118 | 119 | 469 | 352 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 0 | 86 | 476 | 57 | 445 | polygalacturonase; pectinase [Arabidopsis thaliana] |
EMBL | CAA11160.1 | 0 | 86 | 476 | 57 | 445 | polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51033.1 | 0 | 1 | 476 | 1 | 444 | exopolygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 86 | 476 | 57 | 445 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_188020.1 | 0 | 86 | 476 | 57 | 445 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-19 | 194 | 439 | 76 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-19 | 194 | 439 | 76 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-19 | 194 | 439 | 76 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-19 | 194 | 439 | 76 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-19 | 194 | 439 | 76 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |