| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra029683 |
| Family | GH28 |
| Protein Properties | Length: 504 Molecular Weight: 52762.6 Isoelectric Point: 9.681 |
| Chromosome | Chromosome/Scaffold: 05 Start: 22675403 End: 22677313 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 167 | 484 | 0 |
| AIEAATPTTITVPKGDYLVNELMLEGPSKCAITFDMHGNLKAPSAVTTRKPHSGWVNFRKLKDFKLIGNGAIFDGQGSVAWKVNDCKQTGKCNNLPINIR LTQLNNSIISGITSTNSKLFHMNIHQCTNVTLQDVHIDAPPESLNTDGIHVGKSVGVTIRGSKIKTGDDCISIGGGHGLSIGRLGKDPNEQPVKGITIRK CIIKHTDNGVRIKTWPGSPPGLVSGALFEDITMDNVSLPILVDQVYCPHGKCKSGPSKVQLENLSFKNIRGTSSTKIAVQLNCSPGCPCKNVALADINLV STGKEGAAVSACSNVKPT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 504 Download |
| MAGLRLKALF FVLLVVMAIS IANAAKDLKE KDVGVQRNLH EDDKGDKKDD KGDKKEAPNK 60 DDKKDDKKDD KKEEKEESVG SKVAKKVKGA AASVASAASN ASAASAASAA SVASAASGKI 120 KGAVAPIGDK LGLKAPSGPS IDVKASGAKG DGKTDDTAAF MAVWKKAIEA ATPTTITVPK 180 GDYLVNELML EGPSKCAITF DMHGNLKAPS AVTTRKPHSG WVNFRKLKDF KLIGNGAIFD 240 GQGSVAWKVN DCKQTGKCNN LPINIRLTQL NNSIISGITS TNSKLFHMNI HQCTNVTLQD 300 VHIDAPPESL NTDGIHVGKS VGVTIRGSKI KTGDDCISIG GGHGLSIGRL GKDPNEQPVK 360 GITIRKCIIK HTDNGVRIKT WPGSPPGLVS GALFEDITMD NVSLPILVDQ VYCPHGKCKS 420 GPSKVQLENL SFKNIRGTSS TKIAVQLNCS PGCPCKNVAL ADINLVSTGK EGAAVSACSN 480 VKPTVTGKMI PAACTEECKP EKK* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 7.0e-56 | 147 | 494 | 369 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-59 | 129 | 482 | 372 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-60 | 142 | 494 | 371 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-73 | 172 | 482 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-89 | 133 | 495 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL32525.1 | 0 | 80 | 500 | 25 | 443 | polygalacturonase; pectinase [Arabidopsis thaliana] |
| EMBL | CAA11160.1 | 0 | 80 | 500 | 25 | 443 | polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA51033.1 | 0 | 80 | 500 | 25 | 442 | exopolygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA51692.1 | 0 | 80 | 500 | 25 | 443 | exopolygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_188020.1 | 0 | 80 | 500 | 25 | 443 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 4e-18 | 199 | 494 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-18 | 199 | 494 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-18 | 199 | 494 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-18 | 199 | 494 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 4e-18 | 199 | 494 | 33 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
