| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra029690 |
| Family | GH28 |
| Protein Properties | Length: 407 Molecular Weight: 44089.2 Isoelectric Point: 9.2998 |
| Chromosome | Chromosome/Scaffold: 05 Start: 22639133 End: 22641599 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 59 | 395 | 0 |
| WNAACSSTGTVYVVVPKSRAYTLKSVKFSGPCKSSLIVFKIYGKIEAWKDPSAYKERRLWIVFEAVNNLRVEGGGRIDGNGNKWWPNSCKINPNLPCLGA PTAVTFVECKNLMVSNIRLENAQQMHMTFQDCENVKALNLMVTSPGNSPNTDGIHVTGTRNILIQDSIIRTGDDCISIVSGSENVRATGITCGPGHGISI GSLGANNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGVAKNIIFQDIIMKNVTNPIIINQDYCDRVESCPQQKSAVQVSNVLYKNIQGTSSRPVAVKF ECSKSIPCQGISMQNVKLVDQTQQDVVSTASCSNVKL | |||
| Full Sequence |
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| Protein Sequence Length: 407 Download |
| MSPDLYLETN HLHGHITRNN HMKNRHGYAP ASSPRAFNVK SFGAKANGND DSQAFKKAWN 60 AACSSTGTVY VVVPKSRAYT LKSVKFSGPC KSSLIVFKIY GKIEAWKDPS AYKERRLWIV 120 FEAVNNLRVE GGGRIDGNGN KWWPNSCKIN PNLPCLGAPT AVTFVECKNL MVSNIRLENA 180 QQMHMTFQDC ENVKALNLMV TSPGNSPNTD GIHVTGTRNI LIQDSIIRTG DDCISIVSGS 240 ENVRATGITC GPGHGISIGS LGANNSEAYV SNVVVNKATL IGTTNGVRIK TWQGGHGVAK 300 NIIFQDIIMK NVTNPIIINQ DYCDRVESCP QQKSAVQVSN VLYKNIQGTS SRPVAVKFEC 360 SKSIPCQGIS MQNVKLVDQT QQDVVSTASC SNVKLDTKGH VSPICT* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 6.0e-92 | 32 | 394 | 367 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 2.0e-109 | 32 | 403 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-114 | 63 | 394 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-136 | 32 | 380 | 352 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-142 | 33 | 406 | 377 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF21207.1 | 0 | 1 | 406 | 33 | 438 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
| GenBank | ACV85696.1 | 0 | 27 | 405 | 66 | 441 | ripening-induced polygalacturonase 3 [Carica papaya] |
| RefSeq | NP_187454.2 | 0 | 1 | 406 | 33 | 439 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002313308.1 | 0 | 29 | 406 | 1 | 376 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 10 | 405 | 53 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-25 | 118 | 382 | 102 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-18 | 111 | 390 | 54 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-18 | 111 | 390 | 54 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-18 | 111 | 390 | 54 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-18 | 111 | 390 | 54 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX261408 | 268 | 32 | 298 | 0 |
| EE093402 | 249 | 118 | 366 | 0 |
| EE091344 | 242 | 135 | 376 | 0 |
| EY506367 | 322 | 1 | 321 | 0 |
| EX261408 | 37 | 290 | 326 | 0.0002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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