| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra029756 |
| Family | GH1 |
| Protein Properties | Length: 206 Molecular Weight: 23974.2 Isoelectric Point: 8.7809 |
| Chromosome | Chromosome/Scaffold: 05 Start: 22387953 End: 22389361 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH1 | 1 | 192 | 0 |
| MLGWHLDTTMYGDYPQIMKDIVGHRLPQFTAAQKAKLKNSAHFVGLNYYTSTFANHVENPDHSKPRWKQDSLISWEPKNSDKFTIGSTPSTGKLPVFARG FRSLLKYIKDKYANPEIMIMENEASFEYDLSMNEAICIDKVNVTGYFIWSLLDNFEWNEGYKSRFGLYYIDFKNNLTRIEKESGKYYRDFLS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 206 Download |
| MLGWHLDTTM YGDYPQIMKD IVGHRLPQFT AAQKAKLKNS AHFVGLNYYT STFANHVENP 60 DHSKPRWKQD SLISWEPKNS DKFTIGSTPS TGKLPVFARG FRSLLKYIKD KYANPEIMIM 120 ENEASFEYDL SMNEAICIDK VNVTGYFIWS LLDNFEWNEG YKSRFGLYYI DFKNNLTRIE 180 KESGKYYRDF LSQGVRPSTI KRDEL* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02998 | PLN02998 | 2.0e-22 | 2 | 191 | 207 | + beta-glucosidase | ||
| PLN02814 | PLN02814 | 3.0e-24 | 1 | 192 | 212 | + beta-glucosidase | ||
| PLN02849 | PLN02849 | 2.0e-26 | 2 | 191 | 210 | + beta-glucosidase | ||
| TIGR03356 | BGL | 6.0e-33 | 4 | 187 | 203 | + beta-galactosidase. | ||
| pfam00232 | Glyco_hydro_1 | 8.0e-45 | 1 | 192 | 213 | + Glycosyl hydrolase family 1. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB38783.1 | 0 | 1 | 205 | 299 | 525 | beta-glucosidase [Arabidopsis thaliana] |
| GenBank | AAB38784.1 | 0 | 1 | 205 | 211 | 437 | beta-glucosidase [Brassica nigra] |
| DDBJ | BAH20034.1 | 0 | 1 | 205 | 298 | 524 | AT3G09260 [Arabidopsis thaliana] |
| EMBL | CAA61592.1 | 0 | 1 | 205 | 298 | 524 | thioglucoside glucohydrolase [Arabidopsis thaliana] |
| RefSeq | NP_187537.1 | 0 | 1 | 205 | 298 | 524 | PYK10; beta-glucosidase/ copper ion binding / fucosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ptq_B | 2e-36 | 1 | 191 | 293 | 503 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
| PDB | 3ptq_A | 2e-36 | 1 | 191 | 293 | 503 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
| PDB | 3ptm_B | 2e-36 | 1 | 191 | 293 | 503 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
| PDB | 3ptm_A | 2e-36 | 1 | 191 | 293 | 503 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
| PDB | 3ptk_B | 2e-36 | 1 | 191 | 293 | 503 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EY935884 | 228 | 1 | 206 | 0 |
| EV120291 | 208 | 21 | 206 | 0 |
| EX901804 | 223 | 6 | 206 | 0 |
| FY446001 | 228 | 1 | 206 | 0 |
| EY919672 | 228 | 1 | 206 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brassica rapa | Bra035508 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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