| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra029773 |
| Family | PL1 |
| Protein Properties | Length: 332 Molecular Weight: 36939.8 Isoelectric Point: 8.2723 |
| Chromosome | Chromosome/Scaffold: 05 Start: 22323732 End: 22325556 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 62 | 240 | 0 |
| VFDVSGTIHLSSFVNVSSHKTVDGRGQRVKITGKGLRLKQSENVIICNLEFEGGVGPDADAIQIKPKSSIIWIDRCTLKNYYDGLIDITRESTDITVSRC HFVNHNKTMLIGADPSHVTDRCIRVTIHHCFFDGTRQRHPRVRFAKIHLFNNYTRNWSIYAVGAGVEAQVYSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 332 Download |
| MTVEPYCHVD SSLRSLAGKA EGFGRAAVGG LNGPVCHVTS LADEGPGSLR EACKRPEPLW 60 IVFDVSGTIH LSSFVNVSSH KTVDGRGQRV KITGKGLRLK QSENVIICNL EFEGGVGPDA 120 DAIQIKPKSS IIWIDRCTLK NYYDGLIDIT RESTDITVSR CHFVNHNKTM LIGADPSHVT 180 DRCIRVTIHH CFFDGTRQRH PRVRFAKIHL FNNYTRNWSI YAVGAGVEAQ VYSQCNIYEA 240 GEKKTVFKYI TEKAADKEEA EAGFIRSEGD WFLNGAKSCL SHEKEHRVFS PTQHYSGWTV 300 ESSTEKLKKY IKHSTGWQNL PLPSDQLPTT A* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 2.0e-40 | 62 | 236 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 5.0e-48 | 10 | 247 | 260 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 1.0e-66 | 64 | 241 | 190 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI32661.1 | 0 | 1 | 326 | 1 | 325 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_187565.1 | 0 | 1 | 331 | 48 | 378 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002277576.1 | 0 | 1 | 326 | 45 | 369 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 2 | 325 | 3 | 327 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 2 | 326 | 3 | 328 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1e-39 | 10 | 285 | 15 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1e-39 | 10 | 285 | 15 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 6e-26 | 74 | 238 | 127 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 8e-25 | 25 | 238 | 19 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 2e-24 | 50 | 314 | 38 | 320 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY442268 | 240 | 1 | 240 | 0 |
| FY425270 | 241 | 86 | 326 | 0 |
| EV547368 | 241 | 86 | 326 | 0 |
| FY425269 | 227 | 100 | 326 | 0 |
| EX071989 | 226 | 101 | 326 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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