| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra030289 |
| Family | CE8 |
| Protein Properties | Length: 338 Molecular Weight: 37442.5 Isoelectric Point: 9.2349 |
| Chromosome | Chromosome/Scaffold: 04 Start: 9329787 End: 9332316 |
| Description | pectinesterase 11 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 80 | 316 | 0 |
| KEKVVIPVDKPYITLSGTKASSTILVWSDGKDLLDSPTLTVFASDFVCRFLTIQNKFGKGGQAVAVRVAGDNAAFYGCVITSYQDTLLDDDGNHYFKNCY IEGATDFICGNASSLYERCHLHSLSPKNGSITAQKRTSATEKSGFIFLGCKLTGSGLTFLGRPWGAYSRVVFAYSFFSDVVAPQGWNEWRDPSRKDTVYY GEYKCYGPGADRKQRVQWSKQLSDEEATVFLSKDFIG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 338 Download |
| MRRQTHDINA LREALDKANA QVAALEVSRI TGPRIEFLKA LEELLKQNVN DSDKKFRKFV 60 VSSWGGFLVA AAVLVYALKK EKVVIPVDKP YITLSGTKAS STILVWSDGK DLLDSPTLTV 120 FASDFVCRFL TIQNKFGKGG QAVAVRVAGD NAAFYGCVIT SYQDTLLDDD GNHYFKNCYI 180 EGATDFICGN ASSLYERCHL HSLSPKNGSI TAQKRTSATE KSGFIFLGCK LTGSGLTFLG 240 RPWGAYSRVV FAYSFFSDVV APQGWNEWRD PSRKDTVYYG EYKCYGPGAD RKQRVQWSKQ 300 LSDEEATVFL SKDFIGGKEW LRPAPSHFKN APKSNPT* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02634 | PLN02634 | 1.0e-77 | 85 | 323 | 256 | + probable pectinesterase |
| PLN02304 | PLN02304 | 2.0e-81 | 85 | 323 | 257 | + probable pectinesterase |
| PLN02665 | PLN02665 | 5.0e-85 | 85 | 326 | 254 | + pectinesterase family protein |
| PLN02682 | PLN02682 | 5.0e-100 | 85 | 323 | 255 | + pectinesterase family protein |
| PLN02432 | PLN02432 | 3.0e-157 | 85 | 322 | 238 | + putative pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN79458.1 | 0 | 80 | 328 | 84 | 332 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37658.1 | 0 | 80 | 328 | 102 | 350 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_179755.1 | 0 | 77 | 333 | 88 | 344 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002280496.1 | 0 | 80 | 328 | 45 | 293 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305435.1 | 0 | 80 | 329 | 66 | 315 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 1.96182e-44 | 80 | 322 | 47 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 3e-37 | 80 | 322 | 43 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 0.00000000000005 | 115 | 325 | 88 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 0.00000000000005 | 115 | 325 | 88 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 0.00000000000005 | 115 | 325 | 88 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
