| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra030510 |
| Family | GH28 |
| Protein Properties | Length: 421 Molecular Weight: 43854.2 Isoelectric Point: 8.1709 |
| Chromosome | Chromosome/Scaffold: 08 Start: 21516437 End: 21518154 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 392 | 0 |
| QVCASPVPATLLVPKGEFLTGPVIFAGPCKSKVTIEVQGTITATPSGYATPEWFLFEHVDNVLLTGPGTFHGKGEAVWKADGCGKKVNCNLPPTSLKFRN ILNLEIAGISSVNAKAFHMFLVKTTNVNIHNINIIAPAESPNTDGIHLSNAVNVNIVESTIGTGDDCISVGRGSTNVTVEHVTCGPGHGLSVGSLGKYPN EEDVSGIHFKSCTMKGTDNGLRIKSWGGSSPSKAVDIKFEDITMESVKNPIIIDQNYGSRGGDSKVAISDVLFKNVRGTTITKDEVQIMCSKSVPCTGVS VIDVNLNFVGDKGGHPS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 421 Download |
| MAGARSLVKA NHTNVGSLIL MALVFGSCVA NGEYLGGRRG LVAVAGNPTV FDITKFGAVG 60 NGATNSFKAF LNTWLQVCAS PVPATLLVPK GEFLTGPVIF AGPCKSKVTI EVQGTITATP 120 SGYATPEWFL FEHVDNVLLT GPGTFHGKGE AVWKADGCGK KVNCNLPPTS LKFRNILNLE 180 IAGISSVNAK AFHMFLVKTT NVNIHNINII APAESPNTDG IHLSNAVNVN IVESTIGTGD 240 DCISVGRGST NVTVEHVTCG PGHGLSVGSL GKYPNEEDVS GIHFKSCTMK GTDNGLRIKS 300 WGGSSPSKAV DIKFEDITME SVKNPIIIDQ NYGSRGGDSK VAISDVLFKN VRGTTITKDE 360 VQIMCSKSVP CTGVSVIDVN LNFVGDKGGH PSSSGGLIGA LCTNANVIFG GKLSFPMCPK 420 * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-77 | 50 | 405 | 365 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-78 | 50 | 418 | 384 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-80 | 31 | 418 | 400 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-90 | 78 | 407 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-110 | 20 | 419 | 407 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABW24665.1 | 0 | 1 | 420 | 1 | 421 | pollen-specific polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CBI36886.1 | 0 | 17 | 418 | 11 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_171778.1 | 0 | 1 | 420 | 1 | 422 | PGA4 (POLYGALACTURONASE 4); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002268540.1 | 0 | 17 | 418 | 11 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301489.1 | 0 | 13 | 418 | 2 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-20 | 139 | 355 | 113 | 337 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.00000000000008 | 144 | 404 | 83 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.00000000000008 | 144 | 404 | 83 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.00000000000008 | 144 | 404 | 83 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1rmg_A | 0.000000000002 | 52 | 381 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
