| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra030511 |
| Family | CE8 |
| Protein Properties | Length: 577 Molecular Weight: 63637.9 Isoelectric Point: 9.4751 |
| Chromosome | Chromosome/Scaffold: 08 Start: 21511595 End: 21513578 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 262 | 555 | 0 |
| VTVSQDGTGNFTNITAAVAAAPNNTDGSGGFFLIYVTAGIYEEYVLIAKNKKYMMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVTAPNFVAVNMTFRN TAGPEKHQAVALRSGADFSIFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYPRKPMPNQFNAITAQGRSDPNQNTGTSIHNCT IKPADDLVSSNYTVRTYLGRPWKEYSRTVIMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTSRVTWNGYHVANSTDAANFTVTG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 577 Download |
| MKSPLIFLIT LSFFLQSLLV ASHNLANSST ICKTTPDPKY CRSVSPHSQG NVQQYGRFSI 60 RKSLSQSRKF IRTVDKYLKR NAHLSQPAVI RALQDCRFLA GLTMDYLLTS FQTVNVTSAK 120 SSSSKTLSFP KAEDVQTLLS AALTNEQTCL EGLTTAASSS ATWTVRNGVA LPLVNDTKLF 180 SVSLALFTKG WVPKKKKRAG FAWAHPRSGS STHTKPFRLF RNGALPLKMT ERTKAVYESL 240 SRRKLTDGDG DDGSMVLISD IVTVSQDGTG NFTNITAAVA AAPNNTDGSG GFFLIYVTAG 300 IYEEYVLIAK NKKYMMMIGD GINQTVVTGN RSVVDGWTTF NSATFAVTAP NFVAVNMTFR 360 NTAGPEKHQA VALRSGADFS IFYSCSFEAY QDTLYTHSLR QFYRECDVYG TVDFIFGNAA 420 VVFQNCNLYP RKPMPNQFNA ITAQGRSDPN QNTGTSIHNC TIKPADDLVS SNYTVRTYLG 480 RPWKEYSRTV IMQSYIDGFV EPVGWREWNG DFALSTLYYA EYNNTGPGSN TTSRVTWNGY 540 HVANSTDAAN FTVTGLFLED DWIWKTGVPY TSGLIS* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02301 | PLN02301 | 3.0e-145 | 5 | 574 | 586 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02416 | PLN02416 | 1.0e-150 | 3 | 574 | 580 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 0 | 3 | 576 | 583 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 0 | 29 | 575 | 552 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| pfam01095 | Pectinesterase | 0 | 262 | 557 | 297 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL87311.1 | 0 | 1 | 576 | 1 | 573 | unknown protein [Arabidopsis thaliana] |
| DDBJ | BAF00855.1 | 0 | 1 | 576 | 1 | 579 | hypothetical protein [Arabidopsis thaliana] |
| RefSeq | NP_563662.1 | 0 | 1 | 576 | 1 | 579 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567227.1 | 0 | 1 | 576 | 1 | 573 | ATPMEPCRB; pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002523112.1 | 0 | 14 | 575 | 23 | 566 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 264 | 574 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 262 | 574 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3uw0_A | 3e-19 | 272 | 431 | 44 | 220 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 2e-18 | 261 | 483 | 7 | 245 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 2e-18 | 261 | 483 | 7 | 245 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
