| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra030583 |
| Family | PL1 |
| Protein Properties | Length: 432 Molecular Weight: 47927 Isoelectric Point: 8.2442 |
| Chromosome | Chromosome/Scaffold: 08 Start: 21215870 End: 21218221 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 143 | 348 | 0 |
| IQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFESSHVWID HNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTKDRAMQVTIAYNHFGVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 432 Download |
| MTVLPTWILA MMCLFFFVGA MENKTHDKIS SLSRSDEIEW NRHAVTNPDE VADEVLALVE 60 MSARNHTERR KLGYFTCGTG NPIDDCWRCD RNWHKNRKRL ADCGIGFGRN AIGGRDGRFY 120 VVTDPSDHDA VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH 180 IANGGCITIQ FVTNVIVHGL HIHDCRPTGN AMVRSSETHF GWRTMADGDA ISIFESSHVW 240 IDHNSLSHCA DGLVDAVMGS TAITISNNHM THHNEVMLLG HSDSYTKDRA MQVTIAYNHF 300 GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR 360 VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA SSLAAKSSSL VATITSEAGA 420 LPCRRGRQCS S* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-27 | 161 | 344 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-70 | 161 | 346 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-80 | 155 | 350 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADD62392.1 | 0 | 21 | 429 | 41 | 445 | pectase lyase [Prunus persica] |
| DDBJ | BAF43573.1 | 0 | 21 | 429 | 21 | 425 | pectate lyase [Prunus persica] |
| RefSeq | NP_563715.1 | 0 | 22 | 431 | 22 | 431 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567409.1 | 0 | 37 | 429 | 77 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002297822.1 | 0 | 1 | 429 | 1 | 450 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 81 | 421 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 81 | 421 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 6e-17 | 150 | 346 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000008 | 159 | 347 | 119 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.000000000005 | 159 | 346 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
