y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra030619 |
Family | GH28 |
Protein Properties | Length: 399 Molecular Weight: 42054.3 Isoelectric Point: 9.8508 |
Chromosome | Chromosome/Scaffold: 08 Start: 21056131 End: 21058168 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 382 | 0 |
WQAACGSVAAATVMVPIGTFMVKGITFGGPCKSRLKFQLAGTVVAPPDYRAFGNSGYWILFNKVSKISLIGGTFDARANGFWACRKSGQSCPPGVRSITF NSGKDVIISGVKSMNSQVTHMTLNGCTNVAVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGAGTRNFLISKLACGPGHGVSIGSLAKE LNEDGVENVTLSSSVFTGTQNGVRIKSWARPSNGFVKNVFFQNLIMKNVQNPIIIDQNYCPSHKGCPTEHSGVKISQVTYKNIQGTSATQQAMKLVCSQS NPCTGITLQDIKLTYKKGTPATSYCFNA |
Full Sequence |
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Protein Sequence Length: 399 Download |
MTKSNITLPL FFTLLFTLLT FIDVSTGAAN VFNVVSFGAK PDGVTDSTGA FLKAWQAACG 60 SVAAATVMVP IGTFMVKGIT FGGPCKSRLK FQLAGTVVAP PDYRAFGNSG YWILFNKVSK 120 ISLIGGTFDA RANGFWACRK SGQSCPPGVR SITFNSGKDV IISGVKSMNS QVTHMTLNGC 180 TNVAVRNVKL VAPGNSPNTD GFHVQFSTGV TFTGSTVQTG DDCVAIGAGT RNFLISKLAC 240 GPGHGVSIGS LAKELNEDGV ENVTLSSSVF TGTQNGVRIK SWARPSNGFV KNVFFQNLIM 300 KNVQNPIIID QNYCPSHKGC PTEHSGVKIS QVTYKNIQGT SATQQAMKLV CSQSNPCTGI 360 TLQDIKLTYK KGTPATSYCF NALGTSLGVI QPTSCLNR* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-85 | 59 | 382 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-85 | 22 | 392 | 378 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 6.0e-99 | 24 | 395 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 6.0e-102 | 31 | 397 | 374 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 0 | 22 | 398 | 377 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172056.1 | 0 | 1 | 398 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_172057.1 | 0 | 1 | 398 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_181917.1 | 0 | 5 | 396 | 3 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002309713.1 | 0 | 12 | 396 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 12 | 396 | 8 | 390 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 6e-21 | 27 | 385 | 16 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 5e-20 | 138 | 368 | 143 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 5e-19 | 161 | 381 | 116 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 5e-19 | 161 | 381 | 116 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 5e-19 | 161 | 381 | 116 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |