| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra030751 |
| Family | GH2 |
| Protein Properties | Length: 937 Molecular Weight: 106603 Isoelectric Point: 6.5707 |
| Chromosome | Chromosome/Scaffold: 08 Start: 20500931 End: 20505131 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH2 | 38 | 742 | 0 |
| SQSKWMEAVVPGTVLGTLLKNKAIPDPFCGLHNETIIDIADSGRDYYTFWFFTKFQCKRLLNQYVHLNFRAINYSAEVYVNGHKTDLPKGMFRRHSLDVT DILHPENDNLVAVIVHPPDHPGTIPPQGGQGGDHEIGKDVAAQYVEGWDWICPIRDRNTGIWDEVSISVTGPVRIIDPHLVSTFFDNYKRVYLHVTTELE NKSTWKADCSVTIQITTELENGVCLVEILHTENVMIPARGKTQHTFKPLFLYKPELWWPNGMGKQSLYDVVITVVVKEFGESDSWMQPFGFRKVESVIDS VTGGRLFKINGEPIFIRGGNWILSDGLLRLSKERYRTDIKFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPNGPLDH DLFLLCARDTVRLLRNHPSLALWVGGNEQVPPKDINEALKQDLRLHPYFETPSLPDWDADPSVYLDGTRVYIQGSMWDGFADGKGNFTDGPYEIQYPEDF FKDTFYKFGFNPEVGSVGMPVADTIRATMPREGWEIPLFKKGADGFMEEVPSRMWDYHKYIPYSKPGKVHDQILMYGAPRDLDDFCLKAQLVNYIQYRAL LEGWSSRMWTKYTGVLVWKNQNPWTGLRGQFYDHLLDQTASFYGCRSAAEPVHVQLNLASNFIEVVNTTSKKLSDVEIEASVWDLDGNCPYSNVFNRVSA PPKKV | |||
| Full Sequence |
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| Protein Sequence Length: 937 Download |
| MSEIRKTLLH SGWLAARSTE VNEDGKQLTT TNPPSLGSQS KWMEAVVPGT VLGTLLKNKA 60 IPDPFCGLHN ETIIDIADSG RDYYTFWFFT KFQCKRLLNQ YVHLNFRAIN YSAEVYVNGH 120 KTDLPKGMFR RHSLDVTDIL HPENDNLVAV IVHPPDHPGT IPPQGGQGGD HEIGKDVAAQ 180 YVEGWDWICP IRDRNTGIWD EVSISVTGPV RIIDPHLVST FFDNYKRVYL HVTTELENKS 240 TWKADCSVTI QITTELENGV CLVEILHTEN VMIPARGKTQ HTFKPLFLYK PELWWPNGMG 300 KQSLYDVVIT VVVKEFGESD SWMQPFGFRK VESVIDSVTG GRLFKINGEP IFIRGGNWIL 360 SDGLLRLSKE RYRTDIKFHA DMNMNMIRCW GGGLAERPEF YHYCDIYGLL VWQEFWITGD 420 VDGRGVPVSN PNGPLDHDLF LLCARDTVRL LRNHPSLALW VGGNEQVPPK DINEALKQDL 480 RLHPYFETPS LPDWDADPSV YLDGTRVYIQ GSMWDGFADG KGNFTDGPYE IQYPEDFFKD 540 TFYKFGFNPE VGSVGMPVAD TIRATMPREG WEIPLFKKGA DGFMEEVPSR MWDYHKYIPY 600 SKPGKVHDQI LMYGAPRDLD DFCLKAQLVN YIQYRALLEG WSSRMWTKYT GVLVWKNQNP 660 WTGLRGQFYD HLLDQTASFY GCRSAAEPVH VQLNLASNFI EVVNTTSKKL SDVEIEASVW 720 DLDGNCPYSN VFNRVSAPPK KVVKVSEFTY PKSENPKPVY FLLLKLYHVS DKKVISRNFY 780 WLHLPGKDYT LLEPYRKKQI PLKITCDSVL VGPKFELEIT VHNTSRANDV LQEEGLLHKL 840 FSRSAVVAGD SNRGLKVVVG SDPGVAFFLR FSVHNVEAEQ QDTRILPVHY SDNYFSLVPG 900 ESMSFKISFA APTGMKKSPR VVLRGWNYPD GFTVFG* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK10150 | PRK10150 | 8.0e-8 | 81 | 465 | 425 | + beta-D-glucuronidase; Provisional | ||
| PRK09525 | lacZ | 3.0e-8 | 194 | 465 | 296 | + beta-D-galactosidase; Reviewed | ||
| pfam00703 | Glyco_hydro_2 | 6.0e-12 | 210 | 329 | 120 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK10340 | ebgA | 5.0e-13 | 98 | 465 | 383 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| COG3250 | LacZ | 2.0e-37 | 47 | 795 | 781 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO27794.1 | 0 | 1 | 931 | 1 | 971 | glycosyl hydrolase [Gossypium hirsutum] |
| DDBJ | BAE97370.1 | 0 | 1 | 936 | 1 | 946 | endo-beta-mannosidase [Brassica oleracea] |
| RefSeq | NP_563833.2 | 0 | 1 | 936 | 1 | 944 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | XP_002319539.1 | 0 | 1 | 935 | 1 | 973 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512381.1 | 0 | 1 | 935 | 1 | 973 | beta-mannosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 0 | 40 | 927 | 79 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0 | 40 | 927 | 79 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 0 | 40 | 927 | 79 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_A | 0 | 40 | 927 | 79 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x05_B | 0 | 40 | 927 | 79 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES793920 | 367 | 373 | 734 | 0 |
| GO871600 | 333 | 301 | 625 | 0 |
| EX093892 | 246 | 413 | 658 | 0 |
| ES832790 | 301 | 495 | 795 | 0 |
| EX093892 | 34 | 652 | 685 | 0.00000003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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