| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra030780 |
| Family | CBM43 |
| Protein Properties | Length: 308 Molecular Weight: 31344.1 Isoelectric Point: 7.0663 |
| Chromosome | Chromosome/Scaffold: 08 Start: 20391990 End: 20393062 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 111 | 192 | 1.6e-34 |
| WCVAKPGATQTSLQLALDYACGSGKADCSQIQQGGNCYSPISLQNHASFAFNSYYQKNPSPQSCDFGGAASVVSTNPSTGSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 308 Download |
| MAKQSYFFLF LSLVPLCSST THDVINPPTV FPTNPTTTPP ATTFPPVTIT PTNPSPALPL 60 NPPVTVVPPT LTPPVTTNPV TQYPPTQPSG TVPVIPPPVV STSPSVSGQS WCVAKPGATQ 120 TSLQLALDYA CGSGKADCSQ IQQGGNCYSP ISLQNHASFA FNSYYQKNPS PQSCDFGGAA 180 SVVSTNPSTG SCVYQTGSSS GSSTSIPGGT TTPTPSTQTV NQPPLTPTPI TPTGGVTIGV 240 GTPPAVFNPA NPSSNTLPNP SSGGSAVYGF DGSPNGNNPT PSDSTNLKIH FGHTMVVTLI 300 LHAVLFH* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-20 | 111 | 181 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-35 | 111 | 194 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC33206.1 | 0 | 1 | 188 | 1 | 212 | Unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_172417.2 | 0 | 1 | 307 | 1 | 330 | glucan endo-1,3-beta-glucosidase-related [Arabidopsis thaliana] |
| RefSeq | XP_002276666.1 | 0 | 27 | 193 | 344 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319461.1 | 0 | 18 | 298 | 297 | 604 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512573.1 | 0 | 12 | 305 | 94 | 402 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 0.000000000000002 | 103 | 199 | 6 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
