| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra030804 |
| Family | PL4 |
| Protein Properties | Length: 666 Molecular Weight: 76367.8 Isoelectric Point: 4.5623 |
| Chromosome | Chromosome/Scaffold: 08 Start: 20309238 End: 20314170 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 30 | 640 | 0 |
| QLLYQDEHVVIDNGIFQLTLSNPEGFVTGVQYNGIENVLAFTGHENDRGYWDLVWNFPGKKTKKTKGTLDRIEATKMEVITQNDEQIEISFSRTWNASSN VTVPVNIDKRFVVLRNSSGFYTYAIFERLQGWPAVEIDNIRLAIKLDKDKFDYMAISDERQRYMPLPDDRIPPRGKPLAYPEAVQLLDPIEPEFKGEVDD KYEYSMESKDIKVHGWISTNDSVGFWQITPSNEFRSAGPLKQFLGSHVGPTNLAIFHSTHYVGEDLIMKFEEGEAWKKVFGPIFIYLNSFPKEVDPLLLW HEAKNQTKIEEEKWPYNFTNSIDSPASDQRGHVSGRLLVRDRYIGSEDIPAYGSYVGLAAPGDVGSWQREYKGYQFWSKADEEGYFCINNVRSGRYNLFA FVPGFIGDYHNETVIDISPGSNICLEELVYEPPRDAPTLWEIGVPDRTAAEFYIPDPNPMFVNKLYVNSSDNKYRQYGLWERYSELYPDEDMVYDVDVDD YSKDWFYMQVTRFWSQTLNFSAIKIFNRGSLASGRCDQSLNVRPVNEQRLDAQVRVNDVSVDPPLFTTGQIGKDNTIARHGIHGLYWLYSVDVPASSLGL GCNSIYLTQPL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 666 Download |
| MIALIMFLSL FEIAISQNQS YDPETTQVLQ LLYQDEHVVI DNGIFQLTLS NPEGFVTGVQ 60 YNGIENVLAF TGHENDRGYW DLVWNFPGKK TKKTKGTLDR IEATKMEVIT QNDEQIEISF 120 SRTWNASSNV TVPVNIDKRF VVLRNSSGFY TYAIFERLQG WPAVEIDNIR LAIKLDKDKF 180 DYMAISDERQ RYMPLPDDRI PPRGKPLAYP EAVQLLDPIE PEFKGEVDDK YEYSMESKDI 240 KVHGWISTND SVGFWQITPS NEFRSAGPLK QFLGSHVGPT NLAIFHSTHY VGEDLIMKFE 300 EGEAWKKVFG PIFIYLNSFP KEVDPLLLWH EAKNQTKIEE EKWPYNFTNS IDSPASDQRG 360 HVSGRLLVRD RYIGSEDIPA YGSYVGLAAP GDVGSWQREY KGYQFWSKAD EEGYFCINNV 420 RSGRYNLFAF VPGFIGDYHN ETVIDISPGS NICLEELVYE PPRDAPTLWE IGVPDRTAAE 480 FYIPDPNPMF VNKLYVNSSD NKYRQYGLWE RYSELYPDED MVYDVDVDDY SKDWFYMQVT 540 RFWSQTLNFS AIKIFNRGSL ASGRCDQSLN VRPVNEQRLD AQVRVNDVSV DPPLFTTGQI 600 GKDNTIARHG IHGLYWLYSV DVPASSLGLG CNSIYLTQPL AISPFQGLMY DYIRLEYPDS 660 VNHIT* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 7.0e-28 | 358 | 452 | 95 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-28 | 469 | 656 | 196 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-69 | 37 | 322 | 288 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-95 | 1 | 227 | 227 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172459.1 | 0 | 40 | 665 | 1 | 629 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002527353.1 | 0 | 27 | 658 | 4 | 633 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527356.1 | 0 | 37 | 664 | 127 | 752 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527356.1 | 9.80909e-45 | 101 | 227 | 1 | 128 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 25 | 658 | 2 | 634 | lyase, putative [Ricinus communis] |
