| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra030861 |
| Family | GH14 |
| Protein Properties | Length: 444 Molecular Weight: 51267.2 Isoelectric Point: 7.3198 |
| Chromosome | Chromosome/Scaffold: 08 Start: 354496 End: 356872 |
| Description | beta-amylase 5 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 18 | 149 | 0 |
| YIVLPLFGIVAKDNKHAELETTERNLKRLKKEACIDGVMVDVWWGIVESKAPKEYNWNGYKELFKMVKRLELKIHAIMSFHKSSQNRKTTSLPSWVVQVG KENPDIYYTDRKGFRNDECLSLGVDNEPLFDD | |||
| GH14 | 155 | 384 | 0 |
| RTAIQCYDKYLKKDFENAAKKAGHSMLDLSKEDFGDYNSKPDETTFFKENGTYTTEKGEFFLEWYSNKLIIHGDQILREANKIFTGLKIDLVAKVSGVHW LYYHPSHGAELTAGYYNLYDRDGYRPIARMLYKRNCFLNFSCLEMKYYNYSEEALSAPEELVKAVLSKAWKEGIEVIGANTSEIKNEEGYNQVLLNARPN GSNPKGKPKLKVHSFMYLRLSETIFSRNYD | |||
| Full Sequence |
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| Protein Sequence Length: 444 Download |
| MEDINRKEKL FLNYVPVYIV LPLFGIVAKD NKHAELETTE RNLKRLKKEA CIDGVMVDVW 60 WGIVESKAPK EYNWNGYKEL FKMVKRLELK IHAIMSFHKS SQNRKTTSLP SWVVQVGKEN 120 PDIYYTDRKG FRNDECLSLG VDNEPLFDDV NGTKRTAIQC YDKYLKKDFE NAAKKAGHSM 180 LDLSKEDFGD YNSKPDETTF FKENGTYTTE KGEFFLEWYS NKLIIHGDQI LREANKIFTG 240 LKIDLVAKVS GVHWLYYHPS HGAELTAGYY NLYDRDGYRP IARMLYKRNC FLNFSCLEMK 300 YYNYSEEALS APEELVKAVL SKAWKEGIEV IGANTSEIKN EEGYNQVLLN ARPNGSNPKG 360 KPKLKVHSFM YLRLSETIFS RNYDMFKKFV RNMHADQDYC GDAEKYAHKV ESNSAITIEE 420 ILAATKSSGS FKWDEETEAK VDG* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02705 | PLN02705 | 4.0e-82 | 14 | 396 | 440 | + beta-amylase | ||
| PLN00197 | PLN00197 | 5.0e-86 | 15 | 408 | 459 | + beta-amylase; Provisional | ||
| PLN02905 | PLN02905 | 1.0e-101 | 14 | 396 | 442 | + beta-amylase | ||
| PLN02803 | PLN02803 | 3.0e-106 | 15 | 393 | 436 | + beta-amylase | ||
| PLN02801 | PLN02801 | 0 | 8 | 443 | 494 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA07842.1 | 0 | 5 | 443 | 4 | 498 | beta-amylase [Arabidopsis thaliana] |
| DDBJ | BAH20736.1 | 0 | 5 | 443 | 4 | 498 | beta-amylase [Raphanus sativus] |
| EMBL | CAB10300.1 | 0 | 5 | 443 | 4 | 499 | beta-amylase [Arabidopsis thaliana] |
| RefSeq | NP_567460.1 | 0 | 5 | 443 | 4 | 498 | BAM5 (BETA-AMYLASE 5); beta-amylase [Arabidopsis thaliana] |
| RefSeq | XP_002327920.1 | 0 | 8 | 443 | 9 | 499 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1fa2_A | 0 | 13 | 443 | 11 | 493 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
| PDB | 1wdr_A | 0 | 10 | 443 | 7 | 495 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| PDB | 1v3i_A | 0 | 10 | 443 | 7 | 495 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1v3h_A | 0 | 10 | 443 | 7 | 495 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1wdp_A | 0 | 10 | 443 | 7 | 495 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DK561487 | 217 | 229 | 444 | 0 |
| EG522849 | 285 | 162 | 441 | 0 |
| HO777976 | 496 | 7 | 444 | 0 |
| EV022257 | 239 | 211 | 444 | 0 |
| DK501922 | 174 | 1 | 174 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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