| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra031137 |
| Family | GH5 |
| Protein Properties | Length: 433 Molecular Weight: 49707.4 Isoelectric Point: 7.0565 |
| Chromosome | Chromosome/Scaffold: 09 Start: 32329083 End: 32330949 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 52 | 378 | 1.9e-33 |
| DGKPLYVNGWNSYWFMDHAVNDHSRHRVGAMLEAGSKMGLTVCRTWAFNDGGYNALQISPGRFDERVFKALDHVIAEAKTHGVRLLLSLVNNLQNYGGKT QYVNWAWQEGVGLSSSNDSFFFDPSIRRYFKNYLTVLLTRKNSITGIEYRNDPTIFAWELINEPRCLTDISGDTLQDWINEMTAFIKSIDKKHLLTVGLE GFYGPKSPKRLTVNPERWASELGSDFVRNSESPNIDFASVHIYPDHWFHDQGFEENLKFAVKWMQSHMEDGDKELKKPVLFTEFGLSNMNKDYEPSQRDR FYRTIFDVIYKSAKRKRSGAGTLVWQF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 433 Download |
| MSPPGNGPMV PILGFLTCVA FLYLSFGDLW FDYNREAELG FVSRNGTQFV LDGKPLYVNG 60 WNSYWFMDHA VNDHSRHRVG AMLEAGSKMG LTVCRTWAFN DGGYNALQIS PGRFDERVFK 120 ALDHVIAEAK THGVRLLLSL VNNLQNYGGK TQYVNWAWQE GVGLSSSNDS FFFDPSIRRY 180 FKNYLTVLLT RKNSITGIEY RNDPTIFAWE LINEPRCLTD ISGDTLQDWI NEMTAFIKSI 240 DKKHLLTVGL EGFYGPKSPK RLTVNPERWA SELGSDFVRN SESPNIDFAS VHIYPDHWFH 300 DQGFEENLKF AVKWMQSHME DGDKELKKPV LFTEFGLSNM NKDYEPSQRD RFYRTIFDVI 360 YKSAKRKRSG AGTLVWQFLI QGMEGFNDEF GIVPWEKDSI QRLMMEQSCR LGRVTGRLLQ 420 DKKSTEVCSN KP* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12876 | Cellulase-like | 0.002 | 199 | 294 | 105 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
| pfam00150 | Cellulase | 1.0e-5 | 202 | 348 | 148 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 1.0e-23 | 81 | 396 | 316 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD20927.1 | 0 | 2 | 432 | 3 | 403 | (1-4)-beta-mannan endohydrolase [Arabidopsis thaliana] |
| GenBank | ABK95966.1 | 0 | 5 | 428 | 7 | 431 | unknown [Populus trichocarpa] |
| RefSeq | NP_179660.2 | 0 | 2 | 432 | 3 | 433 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_194561.1 | 0 | 1 | 431 | 1 | 430 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002330687.1 | 0 | 5 | 428 | 7 | 431 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 41 | 415 | 6 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 40 | 394 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
