| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra031204 |
| Family | CE8 |
| Protein Properties | Length: 324 Molecular Weight: 35779.1 Isoelectric Point: 7.3835 |
| Chromosome | Chromosome/Scaffold: 09 Start: 32026573 End: 32028809 |
| Description | pectinesterase 11 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 17 | 292 | 0 |
| RVDQSGKGDFNKIQEAIDSIPPNLNNSQLYFIWVKPGVYREKVVIPADKPYITLSGTKASTTVLIWSDGEDILESSTLTVFASDFVCRFLTIQNKFGTAG QAVALRVAADNAAFYGCVIMSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYEKCHLHSLSPNNGSMTAQMRSSATDKSGFSFLGCKLTGTGSTYLG RPWGAYSRVVFAYSFFSDVVAPQGWNEWGDSSKNNTVYYGEYKCYGPGADRRERVKWSKQLSDEEATVFMSKDFIG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 324 Download |
| MASASSSVDF STAILIRVDQ SGKGDFNKIQ EAIDSIPPNL NNSQLYFIWV KPGVYREKVV 60 IPADKPYITL SGTKASTTVL IWSDGEDILE SSTLTVFASD FVCRFLTIQN KFGTAGQAVA 120 LRVAADNAAF YGCVIMSYQD TLLDDNGNHY FKNCYIEGAT DFICGSASSL YEKCHLHSLS 180 PNNGSMTAQM RSSATDKSGF SFLGCKLTGT GSTYLGRPWG AYSRVVFAYS FFSDVVAPQG 240 WNEWGDSSKN NTVYYGEYKC YGPGADRRER VKWSKQLSDE EATVFMSKDF IGGKDWLRPA 300 PSHFKAALSN QTRKNNWFHQ LIN* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02671 | PLN02671 | 7.0e-84 | 2 | 298 | 314 | + pectinesterase | ||
| PLN02634 | PLN02634 | 4.0e-85 | 16 | 299 | 301 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 8.0e-93 | 15 | 302 | 300 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 3.0e-105 | 16 | 299 | 301 | + pectinesterase family protein | ||
| PLN02432 | PLN02432 | 0 | 4 | 298 | 295 | + putative pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN79458.1 | 0 | 2 | 304 | 32 | 332 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37658.1 | 0 | 2 | 304 | 50 | 350 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_179755.1 | 0 | 12 | 307 | 47 | 342 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002280496.1 | 0 | 10 | 304 | 1 | 293 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305435.1 | 0 | 2 | 305 | 13 | 315 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 16 | 308 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 18 | 298 | 7 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 1e-18 | 13 | 301 | 6 | 342 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 1e-18 | 13 | 301 | 6 | 342 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-18 | 13 | 301 | 6 | 342 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| AM722128 | 257 | 9 | 265 | 0 |
| AM721699 | 255 | 9 | 263 | 0 |
| EX283718 | 192 | 113 | 304 | 0 |
| EX278581 | 192 | 113 | 304 | 0 |
| DR952425 | 208 | 9 | 216 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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