| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra031698 |
| Family | CBM22 |
| Protein Properties | Length: 1058 Molecular Weight: 118143 Isoelectric Point: 5.4367 |
| Chromosome | Chromosome/Scaffold: 09 Start: 35189701 End: 35194291 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 343 | 475 | 1.1e-28 |
| IFLNSSFSDGLNHWSGRGCNLMLHESLADGRILPHSGTCFASATERTHKWSGIEQDITERVQRKLIYEASSVVRLSHSHHTVQATLYVQYLDQREEYIGI SSVEANHDDWVKLKGKFLLNGSPARAVVYIEGP | |||
| CBM22 | 175 | 305 | 2.1e-30 |
| NIITNHDFSDGLCSWNSNSCDSFVVGSNECNSESYAVVNNRSETWQGLEQDITDRVSPGCSYKVSASVSVWGPVQRSAQVLATLKLEHQGSPTEFKLIGK TYVSNDVWKTLEGTFALSGRPDRVVFFLEGP | |||
| CBM22 | 5 | 136 | 3e-37 |
| NIVHNGDFSDGLEPWHPNACQAFVVSSDSSSSDSGYAVVTNRKETWQGLEQDITPQVSPGVTYNVSACVGVSGPFHESSQVLATVRLEHDDSPTEYIFVG KTYASRDKWVDLEGTFSISNMPDRVVIYLEGP | |||
| CBM22 | 510 | 654 | 1.5e-37 |
| NIVSNSHLTDGTIEGWFPLGDCHLRVGEGSPQILPPLAKHSLRTTHDYLSGRYVLATNRSGTWMGPAQMITDKVKLFLTYQVSAWVKVGSGGLTCPQDVN IALSVDGKWVNGGKVEVKDGDWHEVVGSFRIEKQAREVMLHVQGP | |||
| GH10 | 712 | 996 | 0 |
| QTSNSFPLGSCISRSNIDNEDFVEFFLNNFKWAVFGNELKWSWTEPEQGNLNYRNADEMLGFCETYNVQTRGHCIFWEVESAIQPWVQQLSEPTLEAAVE NRLTDLLTRYNGKFRHYDVNNEMLHGSFYRDKLGFDARAKMFRTAHELDPLARLFLNEYHIEDGFDSRSSPEKYIKLVHKLQKKGAPVGGIGIQGHITSP VGHIVRNALDKLSTLGLPIWFTELDVSSVNEHVRGDDLEVMLWEAFAHPAVEGVMLWGFWELFMSREDAHLVDADGEVNEAGRRF | |||
| Full Sequence |
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| Protein Sequence Length: 1058 Download |
| MAHSNIVHNG DFSDGLEPWH PNACQAFVVS SDSSSSDSGY AVVTNRKETW QGLEQDITPQ 60 VSPGVTYNVS ACVGVSGPFH ESSQVLATVR LEHDDSPTEY IFVGKTYASR DKWVDLEGTF 120 SISNMPDRVV IYLEGPPPGK DLLIRSVTVK ESTSCDFQET EENKAAFSVY PPPLNIITNH 180 DFSDGLCSWN SNSCDSFVVG SNECNSESYA VVNNRSETWQ GLEQDITDRV SPGCSYKVSA 240 SVSVWGPVQR SAQVLATLKL EHQGSPTEFK LIGKTYVSND VWKTLEGTFA LSGRPDRVVF 300 FLEGPPPGVD LLIKSVTIHC ESDNQFERSR DFSSAPEADH HHIFLNSSFS DGLNHWSGRG 360 CNLMLHESLA DGRILPHSGT CFASATERTH KWSGIEQDIT ERVQRKLIYE ASSVVRLSHS 420 HHTVQATLYV QYLDQREEYI GISSVEANHD DWVKLKGKFL LNGSPARAVV YIEGPPPGID 480 VFVDHFEVKP AEKPPPSRRP YIESHVFGMN IVSNSHLTDG TIEGWFPLGD CHLRVGEGSP 540 QILPPLAKHS LRTTHDYLSG RYVLATNRSG TWMGPAQMIT DKVKLFLTYQ VSAWVKVGSG 600 GLTCPQDVNI ALSVDGKWVN GGKVEVKDGD WHEVVGSFRI EKQAREVMLH VQGPSPGVDL 660 MVAGLQIFAV DHKARLSYLK GQADMVRKRN VRLKVTGLDP NELSGATVKI RQTSNSFPLG 720 SCISRSNIDN EDFVEFFLNN FKWAVFGNEL KWSWTEPEQG NLNYRNADEM LGFCETYNVQ 780 TRGHCIFWEV ESAIQPWVQQ LSEPTLEAAV ENRLTDLLTR YNGKFRHYDV NNEMLHGSFY 840 RDKLGFDARA KMFRTAHELD PLARLFLNEY HIEDGFDSRS SPEKYIKLVH KLQKKGAPVG 900 GIGIQGHITS PVGHIVRNAL DKLSTLGLPI WFTELDVSSV NEHVRGDDLE VMLWEAFAHP 960 AVEGVMLWGF WELFMSREDA HLVDADGEVN EAGRRFLEIK REWLTFVEGV VEDGEGGFEF 1020 RGYHGSYVVE VVTCEGKYVK NFVVEKGNSP VDVIIEL* 1080 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 1.0e-20 | 175 | 307 | 135 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 1.0e-23 | 4 | 140 | 139 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-33 | 748 | 970 | 248 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 6.0e-76 | 714 | 1000 | 307 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-79 | 750 | 996 | 268 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG50641.1 | 0 | 158 | 1057 | 12 | 912 | AC082643_5 xylan endohydrolase isoenzyme, putative [Arabidopsis thaliana] |
| RefSeq | NP_172476.1 | 0 | 1 | 1057 | 1 | 1063 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_176133.1 | 0 | 4 | 493 | 28 | 529 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_176133.1 | 0 | 158 | 1057 | 12 | 914 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002301133.1 | 0 | 5 | 1057 | 2 | 1049 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1tux_A | 2e-27 | 748 | 938 | 47 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1x_A | 3e-27 | 740 | 941 | 39 | 244 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1w_A | 3e-27 | 740 | 941 | 39 | 244 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 4e-27 | 740 | 941 | 39 | 244 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1xyz_B | 1e-26 | 681 | 970 | 2 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO850973 | 328 | 638 | 965 | 0 |
| DK547008 | 226 | 833 | 1058 | 0 |
| GR184067 | 268 | 719 | 986 | 0 |
| EB442796 | 300 | 538 | 837 | 0 |
| EB442796 | 161 | 199 | 345 | 0.00000003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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