| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra031724 |
| Family | GH28 |
| Protein Properties | Length: 516 Molecular Weight: 56709.9 Isoelectric Point: 8.1965 |
| Chromosome | Chromosome/Scaffold: 09 Start: 35046826 End: 35049369 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 130 | 470 | 0 |
| AAACKVEASMMIIPPEYTFLVGPISFSGPYCQANIVFQLDGTIIAPTDSKSWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDYPFIDGETKLIVP LNNSVPMPIRSEFDWKMPSIKPTALRFYGSVGVEVSGITIQNSPQCHLKFDNCVDVLVHDMAVSSPGDSPNTDGIHLQNTRDVLIHSSTLACGDDCISIQ TGCSNVYIHNINCGPGHGISIGSLGKDSTKACVSNITVRDVAMHNTMTGVRIKTWQGGVGAVKGILFSNIQLNEVQLPIVIDQFYCDHTTCKNQTSAVAV EGVTYERIKGTYTVKPVHFACSDDFPCVDVQLSGIELKPVQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 516 Download |
| MIMLMAVLVW SITLETCIAR RGRHWRHNHR SSSDLSDSLS SKKPKSHSHH HSSHNNNHNH 60 HHKSKPKPKP KLKTPPKSDH TKSPVVSPPP KVQPPSLPPP KGSKVFNVMD FGAKGDGKCD 120 DTKAFEAAWA AACKVEASMM IIPPEYTFLV GPISFSGPYC QANIVFQLDG TIIAPTDSKS 180 WGKGLMWWID FTKLKGIKVQ GKGVIDGRGS GWWQQDYPFI DGETKLIVPL NNSVPMPIRS 240 EFDWKMPSIK PTALRFYGSV GVEVSGITIQ NSPQCHLKFD NCVDVLVHDM AVSSPGDSPN 300 TDGIHLQNTR DVLIHSSTLA CGDDCISIQT GCSNVYIHNI NCGPGHGISI GSLGKDSTKA 360 CVSNITVRDV AMHNTMTGVR IKTWQGGVGA VKGILFSNIQ LNEVQLPIVI DQFYCDHTTC 420 KNQTSAVAVE GVTYERIKGT YTVKPVHFAC SDDFPCVDVQ LSGIELKPVQ ERYHMYDPFC 480 WQTFGELNSP TLPPIDCLQI GKPARNRVQS DHDVC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-71 | 106 | 467 | 366 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 1.0e-71 | 106 | 466 | 367 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-81 | 141 | 466 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-82 | 107 | 467 | 366 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-97 | 106 | 494 | 394 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF17670.1 | 0 | 1 | 515 | 14 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
| GenBank | AAL31197.1 | 0 | 62 | 515 | 3 | 473 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
| RefSeq | NP_563875.6 | 0 | 1 | 515 | 14 | 532 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_564758.2 | 0 | 1 | 515 | 14 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266600.1 | 0 | 1 | 515 | 11 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-19 | 148 | 414 | 52 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 9e-19 | 91 | 486 | 5 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 2e-18 | 263 | 466 | 112 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-18 | 263 | 466 | 112 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-18 | 263 | 466 | 112 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
