| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra031771 |
| Family | CE8 |
| Protein Properties | Length: 453 Molecular Weight: 50286.2 Isoelectric Point: 9.2691 |
| Chromosome | Chromosome/Scaffold: 09 Start: 34807722 End: 34809993 |
| Description | methylesterase PCR A |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 141 | 437 | 0 |
| NVVVAKDGTGKYKTVNEAVAAAPENSNSRYVIYVKKGVYKETIDIGKKKKNLMLVGDGKDVTIITGSLNVVDGSTTFRSATVAANGDGFMAQDIWFQNTA GPAKHQAVALRVSADQSVINRCRIDAYQDTLYTHTLRQFYRDSFITGTVDFIFGNSAVVFQNCDIVARKPGAGQKNMLTAQGREDPNQNTAISFQKCRLT ASSDLAPVKGSVKTYLGRPWKLYSRTVIMQSFIDNHIDPAGWFPWDGDFALSTLYYGEYANNGPGADTSKRVKWKGFKVIRDSKEADQFTVAKLIQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 453 Download |
| MVNEARTRSN EVRDKAHFAD CKEMMDVSKD RMVSSMEELR GGNLNLESYS NVHTWLSSVL 60 TNYMTCLDSI SDVSIDSKHR VQPKLEDLVS RARVALSIFV SVLPSKDYLE MILPIHFPSW 120 LNSLDRKLLE SAPKTFEVKA NVVVAKDGTG KYKTVNEAVA AAPENSNSRY VIYVKKGVYK 180 ETIDIGKKKK NLMLVGDGKD VTIITGSLNV VDGSTTFRSA TVAANGDGFM AQDIWFQNTA 240 GPAKHQAVAL RVSADQSVIN RCRIDAYQDT LYTHTLRQFY RDSFITGTVD FIFGNSAVVF 300 QNCDIVARKP GAGQKNMLTA QGREDPNQNT AISFQKCRLT ASSDLAPVKG SVKTYLGRPW 360 KLYSRTVIMQ SFIDNHIDPA GWFPWDGDFA LSTLYYGEYA NNGPGADTSK RVKWKGFKVI 420 RDSKEADQFT VAKLIQGGLW LKPTGVTFQE GL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 5.0e-166 | 9 | 452 | 460 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 1.0e-169 | 11 | 452 | 454 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 0 | 1 | 452 | 452 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 141 | 437 | 297 | + Pectinesterase. | ||
| PLN02488 | PLN02488 | 0 | 22 | 452 | 433 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172624.1 | 0 | 1 | 452 | 106 | 557 | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
| Swiss-Prot | Q1JPL7 | 0 | 1 | 452 | 106 | 557 | PME18_ARATH RecName: Full=Pectinesterase/pectinesterase inhibitor 18; AltName: Full=AtPMEpcrA; Contains: RecName: Full=Pectinesterase inhibitor 18; AltName: Full=Pectin methylesterase inhibitor 18; Contains: RecName: Full=Bifunctional pectinesterase 18/rRNA N-glycosylase; Short=PE 18; AltName: Full=Ribosome-inactivating protein; AltName: Full=Pectin methylesterase 18; AltName: Full=Pectin methylesterase 4; Short=AtPME4; Flags: Precursor |
| RefSeq | XP_002266980.1 | 0 | 1 | 452 | 84 | 528 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002317208.1 | 0 | 6 | 452 | 109 | 549 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518523.1 | 0 | 3 | 452 | 105 | 547 | Pectinesterase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 138 | 452 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 138 | 452 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 6e-24 | 141 | 410 | 5 | 315 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 6e-24 | 141 | 410 | 5 | 315 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 6e-24 | 141 | 410 | 5 | 315 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777316 | 455 | 6 | 453 | 0 |
| FY445789 | 274 | 78 | 351 | 0 |
| EG479028 | 241 | 147 | 387 | 0 |
| FD978629 | 224 | 184 | 407 | 0 |
| EE523294 | 228 | 29 | 256 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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