| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra031832 |
| Family | AA2 |
| Protein Properties | Length: 336 Molecular Weight: 36813.1 Isoelectric Point: 10.0633 |
| Chromosome | Chromosome/Scaffold: 02 Start: 27647499 End: 27648858 |
| Description | root hair specific 19 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA2 | 51 | 319 | 0 |
| KIVQQKVKETFVTIPATLRLFFHDCFVNGCDASVMIQSTPNNKAEKDHPDNVSLAGDGFDVVIKAKKALDAIPSCRNKVSCADILALATRDVVVAAEGPS YPVELGRRDGLESTAASVHGNLPGPNDNVDKLNKLFAKNKLTQEDMIALSAAHTLGFAHCSKVFNRIYNFNRTHIIDPTLNKGYAKDLRLACPKNVDPRI AINIDPITPKKLDNIYFRNLQQGKGLFTSDQVLYTNRRSRPTVDSWAKNSAAFNAAFVKAMTKLGRVGV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 336 Download |
| MINPRRNGAF RSGSRHGSLP YHLCVSGHNH CSAQHNFYGK SCPNVEAIVR KIVQQKVKET 60 FVTIPATLRL FFHDCFVNGC DASVMIQSTP NNKAEKDHPD NVSLAGDGFD VVIKAKKALD 120 AIPSCRNKVS CADILALATR DVVVAAEGPS YPVELGRRDG LESTAASVHG NLPGPNDNVD 180 KLNKLFAKNK LTQEDMIALS AAHTLGFAHC SKVFNRIYNF NRTHIIDPTL NKGYAKDLRL 240 ACPKNVDPRI AINIDPITPK KLDNIYFRNL QQGKGLFTSD QVLYTNRRSR PTVDSWAKNS 300 AAFNAAFVKA MTKLGRVGVK TGHNGNIRRD CGAFN* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00141 | peroxidase | 8.0e-5 | 268 | 299 | 32 | + Peroxidase. | ||
| cd00314 | plant_peroxidase_like | 2.0e-19 | 64 | 316 | 289 | + Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised of classic extracellular plant peroxidases, like horseradish peroxidase. | ||
| pfam00141 | peroxidase | 3.0e-57 | 49 | 204 | 156 | + Peroxidase. | ||
| PLN03030 | PLN03030 | 2.0e-73 | 37 | 335 | 304 | + cationic peroxidase; Provisional | ||
| cd00693 | secretory_peroxidase | 7.0e-156 | 34 | 334 | 301 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACJ11763.1 | 0 | 23 | 335 | 17 | 329 | class III peroxidase [Gossypium hirsutum] |
| EMBL | CAA67362.1 | 0 | 34 | 335 | 11 | 312 | peroxidase ATP9a [Arabidopsis thaliana] |
| RefSeq | NP_190565.1 | 0 | 37 | 335 | 31 | 329 | peroxidase, putative [Arabidopsis thaliana] |
| RefSeq | NP_195468.1 | 0 | 34 | 335 | 28 | 329 | peroxidase 50 (PER50) (P50) (PRXR2) [Arabidopsis thaliana] |
| RefSeq | NP_201541.1 | 0 | 34 | 335 | 28 | 329 | peroxidase 73 (PER73) (P73) (PRXR11) [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3hdl_A | 0 | 34 | 335 | 3 | 303 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
| PDB | 1qo4_A | 0 | 37 | 331 | 7 | 300 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
| PDB | 1pa2_A | 0 | 37 | 331 | 7 | 300 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
| PDB | 1gwu_A | 0 | 37 | 335 | 7 | 306 | A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly |
| PDB | 1gx2_B | 0 | 37 | 335 | 7 | 306 | A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| betanidin degradation | RXN-8635 | EC-1.11.1.7 | peroxidase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY442390 | 257 | 36 | 292 | 0 |
| EX131445 | 292 | 44 | 335 | 0 |
| DT546225 | 286 | 34 | 319 | 0 |
| ES901794 | 243 | 36 | 278 | 0 |
| FY442390 | 27 | 14 | 40 | 0.047 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
