| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra031835 |
| Family | CBM43 |
| Protein Properties | Length: 380 Molecular Weight: 41601.4 Isoelectric Point: 7.7369 |
| Chromosome | Chromosome/Scaffold: 02 Start: 27628081 End: 27629375 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 292 | 374 | 3.8e-33 |
| WCVAKPSVAAETLQQSLDFACGQGGANCDEIKPRGICFYPDTTVAHASYAFNSYWQKTKRNGGSCSFGGTAMLITTDPSYQHC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 380 Download |
| MRHLLYIFFF IPILGFAGAG QESTPIEALN LLQLLPQTTD LELAVSVRDN KTITEISSSI 60 IKAETWLKTH VLSRYPSTKI TTIVIFSPDS CQTTPFDLVL SSLKNLHHSL TRWGLEKKIK 120 VSSGFSYQCL NNLETFKPTL AFLRSINSTF TINPPPNFLY SPDNHLDMLR SVEKLGSLSF 180 NRVNFLNPEP EEAAVAAMAS RRNLRSLVNF STKFTFNFPT LPSPSPENSP VHSSVGYPSP 240 QPSPELSPPE QSPISSPPEQ SPISSPGLSL SPCIPHQTPS PPAKEKGVEG LWCVAKPSVA 300 AETLQQSLDF ACGQGGANCD EIKPRGICFY PDTTVAHASY AFNSYWQKTK RNGGSCSFGG 360 TAMLITTDPS YQHCRFVLS* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00332 | Glyco_hydro_17 | 0.001 | 39 | 168 | 146 | + Glycosyl hydrolases family 17. | ||
| pfam07983 | X8 | 8.0e-25 | 291 | 363 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-41 | 291 | 376 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU22745.1 | 0 | 172 | 379 | 1 | 206 | unknown [Glycine max] |
| EMBL | CBI33700.1 | 0 | 7 | 379 | 11 | 357 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_201547.1 | 0 | 1 | 379 | 1 | 380 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| RefSeq | XP_002279597.1 | 0 | 7 | 379 | 11 | 413 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002525263.1 | 0 | 18 | 375 | 21 | 418 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 5e-20 | 278 | 376 | 2 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
