y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra031912 |
Family | GH3 |
Protein Properties | Length: 779 Molecular Weight: 83680.3 Isoelectric Point: 7.5859 |
Chromosome | Chromosome/Scaffold: 02 Start: 27150453 End: 27153829 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 87 | 336 | 0 |
GVTRLGIPTYEWWSEALHGVSYIGPGTHFSGQVPGATSFPQVILTAASFNVSLFQAIGKVVSTEARAMYNVGLAGLTYWSPNVNIFRDPRWGRGQETPGE DPLLSSKYASGYVKGLQETESSDANRLKVAACCKHYTAYDVDNWKGIERYTFNAVVNQQDMDDTYQPPFKSCVIDGNVASVMCSYNKVNGIPTCADPDLL SGVIRGEWKLNGYIVSDCDSVDVLYKNQHYTKTPEEAAAISINAGLDLNC |
Full Sequence |
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Protein Sequence Length: 779 Download |
MGSSSPLTRR NRAPSSVLSL FLVFLCFSAS SNAQSTPAFA CDVAGNSSLS AYGFCNAALK 60 IEARVADLVG RLTLQEKIGF LVNKANGVTR LGIPTYEWWS EALHGVSYIG PGTHFSGQVP 120 GATSFPQVIL TAASFNVSLF QAIGKVVSTE ARAMYNVGLA GLTYWSPNVN IFRDPRWGRG 180 QETPGEDPLL SSKYASGYVK GLQETESSDA NRLKVAACCK HYTAYDVDNW KGIERYTFNA 240 VVNQQDMDDT YQPPFKSCVI DGNVASVMCS YNKVNGIPTC ADPDLLSGVI RGEWKLNGYI 300 VSDCDSVDVL YKNQHYTKTP EEAAAISINA GLDLNCGSFL GQHTEAAVKA GLVNETAIDK 360 AISNNFLTLM RLGFFDGDPK KQIYGGLGPK DVCTPANQEL AAEAARQGIV LLKNTGSLPL 420 SPTTIKTLAV IGPNANVTKT MIGNYEGTPC KYTTPLQGLA GTVSTTYLPG CSNVACAVAD 480 VDAATKLAAD ADATVLVIGA DQSIEAESRD RVDLNLPGKQ QDLVTQVAKA AKGPVLLVIM 540 SGGGFDITFA KDDPKITGIL WVGYPGEAGG IAIADVIFGR YNPSGRLPMT WYPQSYVEKV 600 PMTNMNMRPD TSNGYPGRTY RFYTGETVYA FGDGISYTKF SHSLVKVPPR VVPLSLEENH 660 VCRSSECQSL DAFGPHCEKK AVGTAFEVHV KVRNGGDREG IHTVFLFTTP PAVHGSPRKH 720 LLGFEKIRLG KREEAVVKFK VDVCKDLSVV DEVGKRKIGL GQHLLHVGDL KHSLSIRI* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 6.0e-52 | 409 | 638 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 3.0e-54 | 89 | 472 | 394 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 4.0e-65 | 73 | 364 | 322 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 2.0e-76 | 35 | 743 | 793 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 32 | 778 | 769 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAE44362.1 | 0 | 1 | 778 | 1 | 780 | alpha-L-arabinofuranosidase [Raphanus sativus] |
RefSeq | NP_196535.1 | 0 | 7 | 778 | 1 | 773 | BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_201262.1 | 0 | 1 | 778 | 1 | 784 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
RefSeq | XP_002264183.1 | 0 | 18 | 778 | 203 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002513707.1 | 0 | 33 | 778 | 35 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 123 | 771 | 91 | 729 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3u48_A | 0 | 123 | 771 | 91 | 729 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3u4a_B | 0 | 123 | 771 | 91 | 729 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3u4a_A | 0 | 123 | 771 | 91 | 729 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 2x41_A | 2e-39 | 64 | 741 | 3 | 676 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |