| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra032270 |
| Family | CBM49 |
| Protein Properties | Length: 610 Molecular Weight: 67327.1 Isoelectric Point: 9.1996 |
| Chromosome | Chromosome/Scaffold: 05 Start: 12132130 End: 12135192 |
| Description | glycosyl hydrolase 9C1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM49 | 517 | 596 | 7.5e-31 |
| IEFLHSITANWMTWNTRYYRHKVIIKNNSQKPISGLKLKIEDLTGPIWGLNPTGQKNTYQLPQWQKTLKAGQAYDFVYVQ | |||
| GH9 | 30 | 491 | 0 |
| NYGNALDKTFLFFEAQRSGKLPAAQRVKWRSHSGLADGLAQGVSLEGGYYDAGDHVKFGLPMAFAVTMLSWAAVDNQKELSGSNQMQQTLWSIRWGTDYF IKAHPQPNVLWGQVGDGKSDHYCWERAEDMTTSRTAYKLDQYHPGSDLAGETAAALAAASLAFKPYNSSYSAILLTHAKELFSFADKYRGLYTDSIPNAK AFYMSSGYSDELLWAAAWLHRATGDEYYLKYAVNNAGYMGGTGWGMKEFSWDNKYAGVQVLLSKILLEGKGGAYTSTLKQYQMKADYFACACLKKNGGYN IQTTPGGLMYVREWNNLQYASAAAFLLAIYSDYLSAANAKLNCPDGSVPPQALLDFSRSQADYILGKNRQGMSYLVGYGPKYPIRVHHRGASIPSIFVQR SSVNCVQGFDSWYRRAQADPNVIYGALVGGPDQNDYYSDDRTNYEQSEPTLSGTAPLIGLFA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 610 Download |
| MSRFGGSLFG LSLLLTVLLG AATAAAEYYN YGNALDKTFL FFEAQRSGKL PAAQRVKWRS 60 HSGLADGLAQ GVSLEGGYYD AGDHVKFGLP MAFAVTMLSW AAVDNQKELS GSNQMQQTLW 120 SIRWGTDYFI KAHPQPNVLW GQVGDGKSDH YCWERAEDMT TSRTAYKLDQ YHPGSDLAGE 180 TAAALAAASL AFKPYNSSYS AILLTHAKEL FSFADKYRGL YTDSIPNAKA FYMSSGYSDE 240 LLWAAAWLHR ATGDEYYLKY AVNNAGYMGG TGWGMKEFSW DNKYAGVQVL LSKILLEGKG 300 GAYTSTLKQY QMKADYFACA CLKKNGGYNI QTTPGGLMYV REWNNLQYAS AAAFLLAIYS 360 DYLSAANAKL NCPDGSVPPQ ALLDFSRSQA DYILGKNRQG MSYLVGYGPK YPIRVHHRGA 420 SIPSIFVQRS SVNCVQGFDS WYRRAQADPN VIYGALVGGP DQNDYYSDDR TNYEQSEPTL 480 SGTAPLIGLF AKLSGKLASA YKAAPTIYTP KQSGAPIEFL HSITANWMTW NTRYYRHKVI 540 IKNNSQKPIS GLKLKIEDLT GPIWGLNPTG QKNTYQLPQW QKTLKAGQAY DFVYVQGGPQ 600 AKVSVLSYY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02340 | PLN02340 | 0 | 27 | 608 | 587 | + endoglucanase | ||
| PLN02171 | PLN02171 | 0 | 29 | 608 | 601 | + endoglucanase | ||
| PLN02420 | PLN02420 | 0 | 29 | 493 | 467 | + endoglucanase | ||
| PLN00119 | PLN00119 | 0 | 30 | 494 | 465 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 0 | 30 | 491 | 464 | + Glycosyl hydrolase family 9. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG29742.1 | 0 | 1 | 608 | 1 | 622 | AC084414_10 endo-beta-1,4-glucanase, putative [Arabidopsis thaliana] |
| EMBL | CBI27137.1 | 0 | 9 | 609 | 5 | 615 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_175323.1 | 0 | 1 | 608 | 1 | 626 | AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002310080.1 | 0 | 26 | 608 | 23 | 610 | glycosyl hydrolase family 9 [Populus trichocarpa] |
| RefSeq | XP_002527135.1 | 0 | 9 | 609 | 6 | 620 | endo-1,4-beta-glucanase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 29 | 477 | 3 | 412 | A Chain A, Crystal Structure Of The C-Terminal Globular Domain Of Oligosaccharyltransferase (Af_0329) From Archaeoglobus Fulgidus |
| PDB | 1ksc_A | 0 | 29 | 477 | 3 | 412 | A Chain A, Crystal Structure Of The C-Terminal Globular Domain Of Oligosaccharyltransferase (Af_0329) From Archaeoglobus Fulgidus |
| PDB | 1ks8_A | 0 | 29 | 477 | 3 | 412 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 0 | 29 | 493 | 24 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 4tf4_B | 0 | 29 | 553 | 4 | 495 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
