| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra032343 |
| Family | GH1 |
| Protein Properties | Length: 336 Molecular Weight: 38713.1 Isoelectric Point: 7.0582 |
| Chromosome | Chromosome/Scaffold: 09 Start: 22415242 End: 22416882 |
| Description | thioglucoside glucohydrolase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH1 | 3 | 320 | 0 |
| LQKDVDVMGELNATGYRFSFAWLRIIPKGKASRGVNQGGLDYYHKLIDALLEKNITPFVTLFHWDLPQTLQDEYEGFLDRQIIQDFKDCADLCFKEFGGK VKHWITINQLYTVPTRGYAVGTDAPGRCSPMVDTKHRCYGGNSSTEPYIVAHNQLLAHATVVDLYRTKYKFQKGKIGPVKITRWFLPFDESDPATIEAAE SMNQFFHGWYMEPLTKGRYPDIMRQIVGSRLPNFTEEEAQLVAGSYDFLGLNYYVTQYAQPKPNPYPSETHTAMMDAGVKLTYKDNGNSYYYPKGIYYVM DYFKTNYGNPLIYVTENG | |||
| Full Sequence |
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| Protein Sequence Length: 336 Download |
| MKLQKDVDVM GELNATGYRF SFAWLRIIPK GKASRGVNQG GLDYYHKLID ALLEKNITPF 60 VTLFHWDLPQ TLQDEYEGFL DRQIIQDFKD CADLCFKEFG GKVKHWITIN QLYTVPTRGY 120 AVGTDAPGRC SPMVDTKHRC YGGNSSTEPY IVAHNQLLAH ATVVDLYRTK YKFQKGKIGP 180 VKITRWFLPF DESDPATIEA AESMNQFFHG WYMEPLTKGR YPDIMRQIVG SRLPNFTEEE 240 AQLVAGSYDF LGLNYYVTQY AQPKPNPYPS ETHTAMMDAG VKLTYKDNGN SYYYPKGIYY 300 VMDYFKTNYG NPLIYVTENG EFYILLLLYF HLYHA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02998 | PLN02998 | 1.0e-75 | 2 | 321 | 325 | + beta-glucosidase | ||
| TIGR03356 | BGL | 6.0e-79 | 4 | 320 | 324 | + beta-galactosidase. | ||
| PLN02814 | PLN02814 | 3.0e-83 | 2 | 320 | 325 | + beta-glucosidase | ||
| PLN02849 | PLN02849 | 1.0e-85 | 2 | 320 | 321 | + beta-glucosidase | ||
| pfam00232 | Glyco_hydro_1 | 9.0e-136 | 2 | 320 | 324 | + Glycosyl hydrolase family 1. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAV80206.1 | 0 | 2 | 320 | 100 | 433 | myrosinase [Brassica rapa subsp. pekinensis] |
| GenBank | AAX68547.1 | 0 | 2 | 320 | 98 | 431 | myrosinase [Brassica rapa var. parachinensis] |
| GenBank | ABG77972.1 | 0 | 2 | 320 | 98 | 431 | myrosinase [Brassica oleracea var. alboglabra] |
| GenBank | ABQ42337.1 | 0 | 2 | 320 | 78 | 411 | myrosinase [Brassica napus] |
| Swiss-Prot | Q00326 | 0 | 2 | 320 | 98 | 431 | MYRO_BRANA RecName: Full=Myrosinase; AltName: Full=Sinigrinase; AltName: Full=Thioglucosidase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1myr_A | 0 | 4 | 320 | 80 | 411 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 2wxd_M | 0 | 4 | 320 | 80 | 411 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1w9d_M | 0 | 4 | 320 | 80 | 411 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1w9b_M | 0 | 4 | 320 | 80 | 411 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1e73_M | 0 | 4 | 320 | 80 | 411 | A Chain A, Myrosinase From Sinapis Alba |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| glucosinolate breakdown | RXN-8134 | EC-3.2.1.147 | thioglucosidase |
| glucosinolate breakdown (via thiocyanate-forming protein) | RXN-12024 | EC-3.2.1.147 | thioglucosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| CX192297 | 264 | 5 | 268 | 0 |
| CD826255 | 258 | 38 | 295 | 0 |
| DY013949 | 238 | 30 | 267 | 0 |
| CN729174 | 235 | 2 | 236 | 0 |
| EV094420 | 262 | 2 | 263 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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