y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra032469 |
Family | CE8 |
Protein Properties | Length: 401 Molecular Weight: 44117.8 Isoelectric Point: 8.2615 |
Chromosome | Chromosome/Scaffold: 09 Start: 36208312 End: 36210024 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 99 | 391 | 0 |
CVDKKGCCNFTTVQSAVDAIGNFSQKRNVIWINSGMYYEKVVIPKTKPNITLQGQGFETTAIAWNDTAYSANGTFYCATVQVFGSQFVAKNISFMNVAPI PKPGDVGAQAVAIRIGGDQSAFLGCGFFGAQDTLHDDRGRHYFKNCYIQGSIDFIFGNAKSLYQDCQIISMANQVSPGSKSVNGAVTANGRNSKDENSGF AFVNCTIGGTGHVWLGRAWRPYSRVIFVSTYMTDVIASEGWNNFNDPSRDATIFYGEYNCSGPGADVSKRAPYVQKLNDTQVAEFVNVTFIDG |
Full Sequence |
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Protein Sequence Length: 401 Download |
MKFRTISLPL SIGIAIVAIL ASKTLFDTHP RAFMHNPFDV LHTIKAISYS AITSVYSRHH 60 HHHHHHHKKP SDTKKKVSIC DDFPKNIPPP DTDTTSYLCV DKKGCCNFTT VQSAVDAIGN 120 FSQKRNVIWI NSGMYYEKVV IPKTKPNITL QGQGFETTAI AWNDTAYSAN GTFYCATVQV 180 FGSQFVAKNI SFMNVAPIPK PGDVGAQAVA IRIGGDQSAF LGCGFFGAQD TLHDDRGRHY 240 FKNCYIQGSI DFIFGNAKSL YQDCQIISMA NQVSPGSKSV NGAVTANGRN SKDENSGFAF 300 VNCTIGGTGH VWLGRAWRPY SRVIFVSTYM TDVIASEGWN NFNDPSRDAT IFYGEYNCSG 360 PGADVSKRAP YVQKLNDTQV AEFVNVTFID GDQWLQLSDL * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-92 | 89 | 396 | 308 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 5.0e-99 | 97 | 399 | 310 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-105 | 100 | 395 | 297 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 7.0e-122 | 98 | 397 | 307 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 22 | 400 | 382 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB71446.1 | 0 | 18 | 400 | 16 | 391 | Similar to Prunus pectinesterase (gb |
GenBank | ABN08648.1 | 0 | 10 | 396 | 9 | 388 | Pectinesterase [Medicago truncatula] |
RefSeq | NP_172023.1 | 0 | 18 | 400 | 16 | 393 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002323171.1 | 0 | 67 | 396 | 48 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 27 | 396 | 26 | 392 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 98 | 398 | 9 | 311 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99965e-42 | 99 | 396 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 8e-18 | 95 | 384 | 2 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 8e-18 | 95 | 384 | 2 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 8e-18 | 95 | 384 | 2 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FG991891 | 258 | 78 | 335 | 0 |
GE593794 | 253 | 132 | 384 | 0 |
EE606596 | 251 | 104 | 354 | 0 |
GO018704 | 245 | 152 | 396 | 0 |
EY909616 | 176 | 226 | 401 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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