| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra032585 |
| Family | GH28 |
| Protein Properties | Length: 419 Molecular Weight: 43869.1 Isoelectric Point: 8.6592 |
| Chromosome | Chromosome/Scaffold: 09 Start: 36732752 End: 36734380 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 391 | 0 |
| QVCDSPVPATLLVPAGQYLAGPVIFAGPCKSRVTVEVQGTIIATTSGYATPEWFLFERVNDVLLTGTGTFNGKGEDIWKEGCGKKTNCNLPPTSLKFRNL KNLEVSGITSVNSKAFHMFLVKTEFVNIHNIKLLAPAESPNTDGIHLSNADHVSITNSKMATGDDCVSIGRGSNNVTIQGIICGPGHGISIGSLGKYKKE EDVSGIHVSNCTMIETDNGLRIKTWGGSDPSKAADIKFENIQMQSVKNPIIIDQNYGSRGGDSQVAVSDVLFSNIRGTTITHNVVQLNCSKSVPCAGVNV VDVNLNYVGKKGKKQSA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 419 Download |
| MANGRRLLAK ANDSKVGSLI LMAVVFGSCL ANGEYLGGGR GLSGSSGAVF DITKFGAVGD 60 GATNTFKAFL KAWIQVCDSP VPATLLVPAG QYLAGPVIFA GPCKSRVTVE VQGTIIATTS 120 GYATPEWFLF ERVNDVLLTG TGTFNGKGED IWKEGCGKKT NCNLPPTSLK FRNLKNLEVS 180 GITSVNSKAF HMFLVKTEFV NIHNIKLLAP AESPNTDGIH LSNADHVSIT NSKMATGDDC 240 VSIGRGSNNV TIQGIICGPG HGISIGSLGK YKKEEDVSGI HVSNCTMIET DNGLRIKTWG 300 GSDPSKAADI KFENIQMQSV KNPIIIDQNY GSRGGDSQVA VSDVLFSNIR GTTITHNVVQ 360 LNCSKSVPCA GVNVVDVNLN YVGKKGKKQS ASGGLVGAIC DNAKVVFGGQ LSFPTCAK* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 6.0e-82 | 49 | 381 | 344 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-85 | 52 | 416 | 377 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-91 | 49 | 379 | 345 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-91 | 77 | 381 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 6.0e-109 | 50 | 417 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABW24665.1 | 0 | 1 | 418 | 1 | 421 | pollen-specific polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CBI36886.1 | 0 | 1 | 417 | 1 | 415 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_171778.1 | 0 | 1 | 418 | 1 | 422 | PGA4 (POLYGALACTURONASE 4); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002268540.1 | 0 | 1 | 417 | 1 | 411 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301489.1 | 0 | 17 | 416 | 5 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 5e-17 | 118 | 380 | 55 | 322 | A Chain A, Crystal Structure Of A Response Regulator From Myxococcus Xanthus |
| PDB | 1ib4_A | 5e-17 | 118 | 380 | 55 | 322 | A Chain A, Crystal Structure Of A Response Regulator From Myxococcus Xanthus |
| PDB | 1ia5_A | 5e-17 | 118 | 380 | 55 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1bhe_A | 6e-17 | 166 | 362 | 151 | 344 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.0000000000003 | 77 | 330 | 18 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY017280 | 240 | 1 | 240 | 0 |
| GR453415 | 238 | 1 | 237 | 0 |
| EG492271 | 278 | 144 | 419 | 0 |
| GR456128 | 280 | 57 | 335 | 0 |
| GR460098 | 279 | 63 | 340 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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