| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra032600 |
| Family | GH28 |
| Protein Properties | Length: 492 Molecular Weight: 53241.7 Isoelectric Point: 5.739 |
| Chromosome | Chromosome/Scaffold: 09 Start: 36785752 End: 36788254 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 119 | 446 | 0 |
| GNDTVSVLLVPYGYTFMIQSTIFTGPCHSYQLFQVDGTIVTPDGPESWPSNISKRQWLVFYRVNGMALKGAGVIDGRGQKWWDLPCKPHRTVNISAIVAG PCDSPIALRFFMSSNLTVEGLQIKNSPQFHFRFDGCQGVHVESLHITAPPLSPNTDGIHIENSNSVTIYNSVISNGDDCVSIGSGSYDVDIRNLTCGPGG HGISIGSLGNHNSHACVSNITVRDSVIKYSDNGVRIKTWQGGFGSVSGVTFNNIHVESVRNPIIIDQYYCMTKDCANKTSAVFVSDITYQGIKGTYDIRS PPMHFGCSDAVPCTNLTLSGIELLPEKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 492 Download |
| MLISSYTRNQ ILCFIALIIT LSSLTESRYH HHKEKHKHNS HNHHSSKPEP PSSSISQPPT 60 PPPGPDDSPS PSLPPSPSDD PEEDDNGVYD VRKFGAVGDG VADDTEAFKT AWDSSCSNGN 120 DTVSVLLVPY GYTFMIQSTI FTGPCHSYQL FQVDGTIVTP DGPESWPSNI SKRQWLVFYR 180 VNGMALKGAG VIDGRGQKWW DLPCKPHRTV NISAIVAGPC DSPIALRFFM SSNLTVEGLQ 240 IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSV ISNGDDCVSI 300 GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SHACVSNITV RDSVIKYSDN GVRIKTWQGG 360 FGSVSGVTFN NIHVESVRNP IIIDQYYCMT KDCANKTSAV FVSDITYQGI KGTYDIRSPP 420 MHFGCSDAVP CTNLTLSGIE LLPEKGEIVV DPFCWNAYGI VEELSIPPVW CLMSDPPTAL 480 QGALVDKCGS P* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-77 | 90 | 476 | 395 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 9.0e-79 | 89 | 447 | 361 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-89 | 116 | 441 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-93 | 91 | 441 | 354 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-115 | 88 | 475 | 390 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD22651.1 | 0 | 7 | 491 | 5 | 452 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
| RefSeq | NP_192098.2 | 0 | 7 | 491 | 5 | 468 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_563654.1 | 0 | 1 | 490 | 1 | 490 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002320271.1 | 0 | 87 | 488 | 41 | 438 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515219.1 | 0 | 6 | 488 | 3 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-26 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-26 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-26 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-26 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-26 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
