y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra032696 |
Family | PL1 |
Protein Properties | Length: 414 Molecular Weight: 45789.1 Isoelectric Point: 9.1907 |
Chromosome | Chromosome/Scaffold: 04 Start: 5408519 End: 5418487 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 132 | 332 | 0 |
LWIVFKRDMVITLSQELIMNSFKTIDGRGVNVHIAGGACITIQYVTNIIIHGVNIHDCKRTGNAMVRSSETHYGWRTMADGDGISIFGSSHIWIDHNSMS NCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRDKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFL A |
Full Sequence |
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Protein Sequence Length: 414 Download |
MVIARTLSSV SATLIIILTL LVHVNGEWHE HAVKDPEEIA AMVDMKIRNS TERRRLGYFS 60 CSTGNPIDDC WRCDKKWHRQ RKRLASCAIG FGRNAVGGRD GRFYVVTDPS DHDPVKPKPG 120 TLRYAVIQDR PLWIVFKRDM VITLSQELIM NSFKTIDGRG VNVHIAGGAC ITIQYVTNII 180 IHGVNIHDCK RTGNAMVRSS ETHYGWRTMA DGDGISIFGS SHIWIDHNSM SNCADGLIDA 240 IMGSTAITIS NNYLTHHNEA ILLGHTDSYT RDKMMQVTIA YNHFGEGLIQ RMPRCRHGYF 300 HVVNNDYTHW EMYAIGGSAN PTINSQGNRF LAPGNRFAKE VTKRVGAGKG EWNQWNWRSQ 360 GDLLLNGAYF TSSGAGASSS YARASSLAAK SSSLVGMLTY SSGALKCRIG TPC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05048 | NosD | 0.001 | 155 | 263 | 121 | + Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain. | ||
COG3866 | PelB | 6.0e-25 | 152 | 330 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-67 | 146 | 330 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-77 | 139 | 334 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 2 | 413 | 3 | 437 | ripening-related pectate lyase [Mangifera indica] |
DDBJ | BAB01216.1 | 0 | 21 | 409 | 48 | 436 | pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_189110.1 | 0 | 21 | 413 | 48 | 440 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193057.4 | 0 | 25 | 413 | 12 | 401 | lyase/ pectate lyase [Arabidopsis thaliana] |
Swiss-Prot | Q9SVQ6 | 0 | 1 | 413 | 1 | 418 | PEL14_ARATH RecName: Full=Putative pectate lyase 14; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 65 | 405 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 65 | 405 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000001 | 134 | 339 | 50 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000004 | 155 | 330 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000002 | 155 | 387 | 151 | 396 | A Chain A, Bacillus Subtilis Pectate Lyase |