| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra032730 |
| Family | PL1 |
| Protein Properties | Length: 452 Molecular Weight: 49792.3 Isoelectric Point: 7.797 |
| Chromosome | Chromosome/Scaffold: 04 Start: 5134044 End: 5137175 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 165 | 370 | 0 |
| IQDEPLWIVFKRDMVIELKQELIMNSFKTIDGRGANVHIANGACITLQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFQSSHIWID HNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTIDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQ GNRYAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 452 Download |
| MASSSQKVTS VCLTVLVLLA LSATILRKIE IPSSRKVKTE ELQSSKNTST MAANRLEGVE 60 LNEQHAVDDP DKVADEVSTL VQMSEHNITA RRKLGFFSCG TGNPIDDCWR CDRNWHKNRK 120 RLADCGIGFG RNAVGGRDGR FYVVTDPTDE DVINPKPGTL RHAVIQDEPL WIVFKRDMVI 180 ELKQELIMNS FKTIDGRGAN VHIANGACIT LQFITNVIIH GVHIHDCKPT GNAMVRSSPS 240 HFGWRTMADG DAVSIFQSSH IWIDHNSLSH CADGLVDAVM GSTAITVSNN HFTHHNEVML 300 LGHSDSYTID KLMQVTIAYN HFGEGLVQRM PRCRHGYFHV VNNDYTHWEM YAIGGSADPT 360 INSQGNRYAA PKNPFAKEVT KRVETDASEW QKWNWRSEGD LLLNGAFFKA SGAEASASYG 420 RASSLAAKPS SMVHTITSTA GALGCRRGRP C* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-26 | 190 | 366 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-70 | 183 | 368 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-79 | 177 | 372 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADD62392.1 | 0 | 30 | 451 | 29 | 445 | pectase lyase [Prunus persica] |
| DDBJ | BAF43573.1 | 0 | 30 | 451 | 9 | 425 | pectate lyase [Prunus persica] |
| EMBL | CAB36835.1 | 0 | 84 | 451 | 7 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
| RefSeq | NP_567409.1 | 0 | 1 | 451 | 1 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002297822.1 | 0 | 12 | 451 | 9 | 450 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 103 | 443 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 103 | 443 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-16 | 172 | 368 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.0000000000005 | 193 | 369 | 135 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.00000000001 | 183 | 386 | 73 | 304 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
