| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra032758 |
| Family | CBM43 |
| Protein Properties | Length: 481 Molecular Weight: 53681.3 Isoelectric Point: 8.5059 |
| Chromosome | Chromosome/Scaffold: 04 Start: 4820521 End: 4822173 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 391 | 474 | 2.8e-24 |
| WCVPVVGASEAQLEEALRMACGRSNTTCAALAPGRECYEPVSVYWHASYAVSSYWAEFRTENVRCYFNGLARMTTVNPGNDRCK | |||
| GH17 | 43 | 365 | 0 |
| IGINYGRRGNNLPSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHLITSLSTNQTTAEDWVQTNIIPYYPQTHIRFVLVGNEILSVEE RRNITANVVPAMRKIVTSLRAHGIHNIKVGTALDMDSLRSSFPPSNSTFREDIAEPLMLPLLKFLNGTNSYFFINLQPYFRWSRNPMNTSLDYALFQGNS TYTDPQTGLVYRNLLDQMLDSVIFAMTKLGYPHIRIAISETGWPNSGDIDETGANVLNAATYNRNLIKKMTAIPPIGTPARPGLAIPTFVFSLFDEDQKS GSGTQRHYGILHPDGTPIYDIDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 481 Download |
| MSLLVFSLFT ILVFSSSCCS ATRFQHQHRY MQKKITLDLP SKIGINYGRR GNNLPSPYQS 60 INFIKSIKAG HVKLYDADPE SLTLLSQTNL YVTITVPNHL ITSLSTNQTT AEDWVQTNII 120 PYYPQTHIRF VLVGNEILSV EERRNITANV VPAMRKIVTS LRAHGIHNIK VGTALDMDSL 180 RSSFPPSNST FREDIAEPLM LPLLKFLNGT NSYFFINLQP YFRWSRNPMN TSLDYALFQG 240 NSTYTDPQTG LVYRNLLDQM LDSVIFAMTK LGYPHIRIAI SETGWPNSGD IDETGANVLN 300 AATYNRNLIK KMTAIPPIGT PARPGLAIPT FVFSLFDEDQ KSGSGTQRHY GILHPDGTPI 360 YDIDFTGEKP LTGFNPLPKP TNNVPYKGIV WCVPVVGASE AQLEEALRMA CGRSNTTCAA 420 LAPGRECYEP VSVYWHASYA VSSYWAEFRT ENVRCYFNGL ARMTTVNPGN DRCKFPGVTL 480 * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.002 | 280 | 356 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-10 | 391 | 461 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 5.0e-25 | 391 | 475 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-137 | 43 | 365 | 324 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM64490.1 | 0 | 15 | 480 | 15 | 476 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| DDBJ | BAG16359.1 | 0 | 54 | 453 | 1 | 399 | tapetum-specific protein A6 family protein [Brassica oleracea var. italica] |
| DDBJ | BAG16366.1 | 0 | 54 | 453 | 1 | 399 | tapetum-specific protein A6 family protein [Brassica rapa var. perviridis] |
| EMBL | CAA49513.1 | 0 | 6 | 480 | 1 | 474 | beta-1,3-glucanase homologue [Brassica napus] |
| RefSeq | NP_193144.1 | 0 | 1 | 480 | 1 | 478 | MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 43 | 365 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 43 | 365 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 43 | 365 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 42 | 366 | 1 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 42 | 366 | 1 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
