Basic Information | |
---|---|
Species | Brassica rapa |
Cazyme ID | Bra032833 |
Family | GH47 |
Protein Properties | Length: 572 Molecular Weight: 65918 Isoelectric Point: 6.42 |
Chromosome | Chromosome/Scaffold: 09 Start: 12538246 End: 12541973 |
Description | Glycosyl hydrolase family 47 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH47 | 41 | 474 | 0 |
MFYHAYDNYMTYAFPHDELKPITKSFTDSLSELGNLKLEHLPTDYNGSAVTLVESLSSLAILGNKTEFEKGVLWLSENLTFDVDVRVNLFECNIRLLGGL ISAHLLAIDPTNRLIQGSYNNELLRLAEDLGKRFLPAFETPTRIPYAWINFKKGVMENETTETSTSGCGSLILEMGALSRLTGDPRFESAALRALRQLWR MRSSLDLLGTTLDVVTGEWLEYSSGIGAGVDSFYEYLMKAYILFGKEDYWRMFRSAYLASQKYFRYGPWYHEANMWSGKPTYWQLTSLQAFWPGLQVLVG DVAAANSSHWEFFHAWEKFGVIPERYLLDHQMIHPTERYYPLRPELAESTFYLYQATKDPWYLDVGEAMVKSLNRYTKVAGGFASVRDVTTMQLEDHQHS FFLAETCKYLYLLFDDSFVAKRNYIFTTEGHPIQ |
Full Sequence |
---|
Protein Sequence Length: 572 Download |
MFRPKHVFIC FLISFAFFID PSSQHVDDVK KQQMREKVRE MFYHAYDNYM TYAFPHDELK 60 PITKSFTDSL SELGNLKLEH LPTDYNGSAV TLVESLSSLA ILGNKTEFEK GVLWLSENLT 120 FDVDVRVNLF ECNIRLLGGL ISAHLLAIDP TNRLIQGSYN NELLRLAEDL GKRFLPAFET 180 PTRIPYAWIN FKKGVMENET TETSTSGCGS LILEMGALSR LTGDPRFESA ALRALRQLWR 240 MRSSLDLLGT TLDVVTGEWL EYSSGIGAGV DSFYEYLMKA YILFGKEDYW RMFRSAYLAS 300 QKYFRYGPWY HEANMWSGKP TYWQLTSLQA FWPGLQVLVG DVAAANSSHW EFFHAWEKFG 360 VIPERYLLDH QMIHPTERYY PLRPELAEST FYLYQATKDP WYLDVGEAMV KSLNRYTKVA 420 GGFASVRDVT TMQLEDHQHS FFLAETCKYL YLLFDDSFVA KRNYIFTTEG HPIQVMRSWH 480 EKLPESYFSG NWTFSKSGEW ESGASALSMK VCPSIAPNSR LREQHRESVC HVPDQKIDHK 540 CWSNRECGVD ATTCRQRSCS EVGFCGLWNP L* |
Functional Domains Download unfiltered results here | ||||||
---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PTZ00470 | PTZ00470 | 1.0e-74 | 17 | 475 | 495 | + glycoside hydrolase family 47 protein; Provisional |
pfam01532 | Glyco_hydro_47 | 9.0e-149 | 41 | 473 | 470 | + Glycosyl hydrolase family 47. Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2). |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
GO:0005509 | calcium ion binding |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_564288.1 | 0 | 2 | 571 | 5 | 574 | glycoside hydrolase family 47 protein [Arabidopsis thaliana] |
RefSeq | XP_002280345.1 | 0 | 1 | 568 | 1 | 570 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318019.1 | 0 | 34 | 568 | 1 | 527 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321565.1 | 0 | 9 | 568 | 11 | 564 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511454.1 | 0 | 11 | 568 | 13 | 572 | Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nxc_A | 0 | 28 | 477 | 14 | 467 | A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) |
PDB | 1fmi_A | 0 | 35 | 475 | 11 | 456 | A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase |
PDB | 1fo3_A | 0 | 35 | 475 | 11 | 456 | A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase |
PDB | 1fo2_A | 0 | 35 | 475 | 11 | 456 | A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In Complex With 1-Deoxymannojirimycin |
PDB | 1x9d_A | 0 | 19 | 475 | 73 | 534 | A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue |