| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra033199 |
| Family | GH116 |
| Protein Properties | Length: 843 Molecular Weight: 94260.6 Isoelectric Point: 5.1237 |
| Chromosome | Chromosome/Scaffold: 02 Start: 17586781 End: 17591177 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH116 | 486 | 834 | 0 |
| GQFIYLEGIEYLMYNTYDVHFYSSFALLILFPKLELSIQRDFAAAVMIQDPTKKEIMSSGELVPRKLLGSVPHDIGLNNPWLELNAYNLFNTDRWKDLNA KFVLQVYRDVVATGDQSFARAVWPSVYLAVAYLDQFDKDEDGMIENEGFPDQTYDTWSVTGVSAYCGGLYVAALQAASAFATIVGENAVAFYFNAKYEKA KTVYEKLWNGSYFDYDNSGSDSSSSILADQLAGQWYARACGLKPITKEEWIKKALETIHEFNVMKVRGGTRGAVNGMSPDGQVDTNSLVSKEVWAGTTYS VAACMIQEGQREKGFQTASGIYEAVWSDRGLSCSFQTPEAWNMNDEYRK | |||
| Full Sequence |
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| Protein Sequence Length: 843 Download |
| MESELQTQLV GSETLSLPQV TWQRKLNSKV KNPSEFKMST SDFLHLFPIG YRLWRHTKQE 60 AAKGKVSIYD IFKKKNVKGN HGVPLGGVGA GSIGRSYKGE FQQFKLFPKV CEEAPILTNQ 120 FSVFVSRPGG VNYSTVLCAK SPESVNGRTE DLGIESWDWK IKGDKSTYHA LYPRSWTVYN 180 EPDPELRIVS RQVSPFIPNN YKESSFPVSV FAFTATNLGK EEATVTLLFT WENSVGGASG 240 FTGEHFNSST MERDGVHAIA LHHKTANGHP PVTYAIAAQE TDDVSVSECP CFLVSGCSPN 300 EITARAMWDE IKENKSFDRL PCEPGSPSRL GTAIGAAIAA KVKVPPGCDR TVTFSLSWDC 360 PEVRFNEKTY HRRYTRFYGS LGDAAVNMAR DALLNYGNWE SQIEEWQNTI LLDTSLPDWY 420 RVTLFNELYY FNSGGAIWTD GLPYKQSTER STEQNSNDTD ILQKINAVCD QVHHSPQSRS 480 SEENIGQFIY LEGIEYLMYN TYDVHFYSSF ALLILFPKLE LSIQRDFAAA VMIQDPTKKE 540 IMSSGELVPR KLLGSVPHDI GLNNPWLELN AYNLFNTDRW KDLNAKFVLQ VYRDVVATGD 600 QSFARAVWPS VYLAVAYLDQ FDKDEDGMIE NEGFPDQTYD TWSVTGVSAY CGGLYVAALQ 660 AASAFATIVG ENAVAFYFNA KYEKAKTVYE KLWNGSYFDY DNSGSDSSSS ILADQLAGQW 720 YARACGLKPI TKEEWIKKAL ETIHEFNVMK VRGGTRGAVN GMSPDGQVDT NSLVSKEVWA 780 GTTYSVAACM IQEGQREKGF QTASGIYEAV WSDRGLSCSF QTPEAWNMND EYRKEAELDG 840 GR* 900 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12215 | GBA2_N | 7.0e-60 | 82 | 399 | 327 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 7.0e-95 | 81 | 827 | 789 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 4.0e-149 | 486 | 833 | 352 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM19831.1 | 0 | 2 | 833 | 8 | 840 | AT4g10060/T5L19_190 [Arabidopsis thaliana] |
| GenBank | AAO42222.1 | 0 | 17 | 833 | 17 | 867 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_174631.2 | 0 | 17 | 833 | 17 | 867 | catalytic/ glucosylceramidase [Arabidopsis thaliana] |
| RefSeq | NP_192744.6 | 0 | 2 | 833 | 8 | 840 | catalytic/ glucosylceramidase [Arabidopsis thaliana] |
| RefSeq | XP_002325943.1 | 0 | 46 | 833 | 1 | 815 | predicted protein [Populus trichocarpa] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DK487527 | 261 | 1 | 261 | 0 |
| DK495185 | 249 | 1 | 249 | 0 |
| DK472837 | 239 | 1 | 239 | 0 |
| DK503614 | 238 | 1 | 238 | 0 |
| DY292040 | 335 | 499 | 833 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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