| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra033312 |
| Family | GH5 |
| Protein Properties | Length: 412 Molecular Weight: 46104.2 Isoelectric Point: 5.7704 |
| Chromosome | Chromosome/Scaffold: 10 Start: 4331696 End: 4334049 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 40 | 366 | 3.7e-35 |
| NGERVYLNGFNAYWMMTTAADTASKGRTTVTTALRQASTVGMNVARIWGFNEGDYLPLQISPGSYSEDVFKGLDFVVYEAGRYNIKLIISLVNNFEDFGG RKKYVEWAGLDEPDEFYTNSVVKQFYKNHVKTVLTRKNTITGRAYKEDPTIFSWELINEPRCNDSSGSTILQNWVKEMAGYVKSIDSNHLLEIGLEGFYG ESKPERTVYNPGGAVLTGTDFISNNQIPEIDFATIHIYPDSWLPLQSSRTGEQDEFVDNWIGAHIQDCDSIIKKPLLITEFGKSSKFPGFSIEERNKFFK SVYDVIYDSARTGGSCTGGVFWQLTTN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 412 Download |
| MLNTVPFFLF LLLFLVGNYR ISVAEKAGFV GRNGTQFVLN GERVYLNGFN AYWMMTTAAD 60 TASKGRTTVT TALRQASTVG MNVARIWGFN EGDYLPLQIS PGSYSEDVFK GLDFVVYEAG 120 RYNIKLIISL VNNFEDFGGR KKYVEWAGLD EPDEFYTNSV VKQFYKNHVK TVLTRKNTIT 180 GRAYKEDPTI FSWELINEPR CNDSSGSTIL QNWVKEMAGY VKSIDSNHLL EIGLEGFYGE 240 SKPERTVYNP GGAVLTGTDF ISNNQIPEID FATIHIYPDS WLPLQSSRTG EQDEFVDNWI 300 GAHIQDCDSI IKKPLLITEF GKSSKFPGFS IEERNKFFKS VYDVIYDSAR TGGSCTGGVF 360 WQLTTNRTGL LGDGYEVFMQ QGPNTTAKLI AEQSIKLKNL KCPPLVTHSA V* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00150 | Cellulase | 2.0e-5 | 40 | 325 | 293 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 3.0e-28 | 37 | 400 | 377 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABG88068.1 | 0 | 3 | 400 | 9 | 409 | endo-1,4-beta-mannanase [Glycine max] |
| RefSeq | NP_171733.2 | 0 | 1 | 410 | 1 | 410 | glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002281804.1 | 0 | 9 | 401 | 8 | 399 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002302695.1 | 0 | 2 | 399 | 4 | 402 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515142.1 | 0 | 2 | 400 | 4 | 403 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 29 | 400 | 6 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 38 | 364 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 38 | 364 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 38 | 364 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 38 | 364 | 21 | 343 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
