| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra033328 |
| Family | GH28 |
| Protein Properties | Length: 492 Molecular Weight: 53327.9 Isoelectric Point: 6.332 |
| Chromosome | Chromosome/Scaffold: 10 Start: 4227623 End: 4229852 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 117 | 444 | 0 |
| SNQNDTVSVLFVPYGYTFMIHSTIFTGPCHSYQILQVDGTIITPDGPESWPSNISKRQWLVFYRVNGMALKGAGVIDGRGQKWWDLPCKPHRSVNKSAIF AGPCDSPIALRFFMSSNLTVEGLMIKNSPQFNFRFDGCQGVHVESLHITAPPLSPNTDGIHIENSNSVTIYNSVISNGDDCVSIGSGSYDVDIRNLTCGP GGHGISIGSLGNHNSHACVSNITVRDSIIKYSDNGVRIKTWQGGSGSVSGVTFNNIHVESVRNPIIIDQYYCMTKDCSNKTSAVFVSDIAYQGIKGTYDI RSPPMHFGCSDAIPCTNLTLSGIELLPA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 492 Download |
| MLVSSYTRNH ILFFIALILT LTSLTESRYH HHKEKHKHNS HNHHSSKPEP PSSSISQPPT 60 PPPGPNDSPS PSLPPSPSDE PEEDNNGFYN VRKFGAVGDG VTDDTEAFKT AWDSSCSNQN 120 DTVSVLFVPY GYTFMIHSTI FTGPCHSYQI LQVDGTIITP DGPESWPSNI SKRQWLVFYR 180 VNGMALKGAG VIDGRGQKWW DLPCKPHRSV NKSAIFAGPC DSPIALRFFM SSNLTVEGLM 240 IKNSPQFNFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSV ISNGDDCVSI 300 GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SHACVSNITV RDSIIKYSDN GVRIKTWQGG 360 SGSVSGVTFN NIHVESVRNP IIIDQYYCMT KDCSNKTSAV FVSDIAYQGI KGTYDIRSPP 420 MHFGCSDAIP CTNLTLSGIE LLPAKGDIVL DPFCWNAYGL AEELSIPPVW CPMSDPPTAL 480 PGALVDKCGS P* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 6.0e-75 | 90 | 471 | 388 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 4.0e-77 | 89 | 447 | 361 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-86 | 119 | 441 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-93 | 90 | 441 | 355 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 9.0e-117 | 91 | 468 | 380 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD22651.1 | 0 | 76 | 491 | 52 | 452 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
| EMBL | CBI37004.1 | 0 | 89 | 488 | 89 | 484 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_192098.2 | 0 | 76 | 491 | 52 | 468 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_563654.1 | 0 | 1 | 490 | 1 | 490 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002320271.1 | 0 | 84 | 488 | 38 | 438 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 3e-26 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-26 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-26 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-26 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 3e-26 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
