| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra033347 |
| Family | GH28 |
| Protein Properties | Length: 421 Molecular Weight: 44342.9 Isoelectric Point: 8.8064 |
| Chromosome | Chromosome/Scaffold: 10 Start: 4125877 End: 4127403 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 389 | 0 |
| QVCASPVPATLLVPKGNFLAGPIIFAGPCKSKVTVNVQGTISATTSGFATPEWILFERVDNVHLTGPGIIHGRGEAIWGADGCGKKFKCNLPPTSLKFRN IVNLEVSGISSVNAKAFHMFLVKTVNVNIHNIKIIAPAESPNTDGIHLSNADNVRILDSFIGTGDDCVSVGRGSNNVTVERVVCGPGHGLSVGSLGKYPN EEDVSGIHFKNCTMRNTDNGLRIKSWGGSTPSKAVDIHFEDIIMENVKNPIIIDQNYGSRGGESRVAISDVLFKGVKGTTITKDFVQFMCSKSVPCKGVV VDDVNLNFVGHKGGHP | |||
| Full Sequence |
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| Protein Sequence Length: 421 Download |
| MANARMLAAK ANNTNIGSFI IMALVLGSCV ANGEYLGGGR ELTGNPTVFD ITQFGAVGDG 60 RTNTFKAFLK AWIQVCASPV PATLLVPKGN FLAGPIIFAG PCKSKVTVNV QGTISATTSG 120 FATPEWILFE RVDNVHLTGP GIIHGRGEAI WGADGCGKKF KCNLPPTSLK FRNIVNLEVS 180 GISSVNAKAF HMFLVKTVNV NIHNIKIIAP AESPNTDGIH LSNADNVRIL DSFIGTGDDC 240 VSVGRGSNNV TVERVVCGPG HGLSVGSLGK YPNEEDVSGI HFKNCTMRNT DNGLRIKSWG 300 GSTPSKAVDI HFEDIIMENV KNPIIIDQNY GSRGGESRVA ISDVLFKGVK GTTITKDFVQ 360 FMCSKSVPCK GVVVDDVNLN FVGHKGGHPS ASGGLIGSLC NNAGVVFGGR VNFPLCPNRK 420 * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-80 | 48 | 419 | 386 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-87 | 48 | 416 | 382 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-89 | 46 | 416 | 383 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-96 | 76 | 403 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-114 | 37 | 417 | 390 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABW24665.1 | 0 | 1 | 417 | 1 | 420 | pollen-specific polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CBI36886.1 | 0 | 20 | 416 | 13 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_171778.1 | 0 | 1 | 417 | 1 | 421 | PGA4 (POLYGALACTURONASE 4); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002301488.1 | 0 | 65 | 416 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301489.1 | 0 | 17 | 416 | 5 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-18 | 134 | 353 | 110 | 337 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.000000000000004 | 50 | 379 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1hg8_A | 0.0000000000001 | 69 | 371 | 11 | 323 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_B | 0.0000000000007 | 143 | 402 | 84 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_A | 0.0000000000007 | 143 | 402 | 84 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR462238 | 281 | 14 | 294 | 0 |
| GR462863 | 276 | 75 | 350 | 0 |
| CX191123 | 278 | 134 | 411 | 0 |
| GR459547 | 271 | 1 | 271 | 0 |
| GR450695 | 270 | 13 | 282 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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