| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra033348 |
| Family | CE8 |
| Protein Properties | Length: 701 Molecular Weight: 77696 Isoelectric Point: 8.6945 |
| Chromosome | Chromosome/Scaffold: 10 Start: 4120781 End: 4123451 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 260 | 553 | 0 |
| VTVIQDGTGNFTNITAAVGAAPNNTDGSGGFFLIYVTAGIYEEYVSIAKNKRYVMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVTAPNFVAVNITFQN TAGPEKHQAVALRSGADFSIFYSCSFEAYQDTLYTHYLRQLYRECDVYGTVDFIFGNAAVVFQNCNLYPRKPMPNQFNAITAQGRSDPNQNTGTSIQNCT IRPADDLVLSNYTVETYLGRPWKNYSRTVIMESYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINSTDAANFTVTG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 701 Download |
| MESPLLFLIT LLCFLQSLLV ASHNLSKSST ICKTTPDPKY CKTVFPHSQG NVQQYGRFSI 60 RKSLSQSRKF IRTVDKYLKR NAHASPPAVT RALQDCRFLA GLTMDYLLTS FETVNETSTF 120 KTLSFPKADD VQTLLSAALT NEQTCLEGLT TAASSSATWT VRNGVALPLV NDTKLFSVSL 180 ALFTKGWVPK KKKRAGYPWA HPSSGTSTHT KPFRLFRNGA LPLKMTERTK AVYESLSRRK 240 LTDGAGDGDD GSMVLISDIV TVIQDGTGNF TNITAAVGAA PNNTDGSGGF FLIYVTAGIY 300 EEYVSIAKNK RYVMMIGDGI NQTVVTGNRS VVDGWTTFNS ATFAVTAPNF VAVNITFQNT 360 AGPEKHQAVA LRSGADFSIF YSCSFEAYQD TLYTHYLRQL YRECDVYGTV DFIFGNAAVV 420 FQNCNLYPRK PMPNQFNAIT AQGRSDPNQN TGTSIQNCTI RPADDLVLSN YTVETYLGRP 480 WKNYSRTVIM ESYIDGFVEP VGWREWNGDF ALSTLYYAEY NNTGPGSNTT NRVTWPGYHV 540 INSTDAANFT VTGLFLEDDW IWKTGVPYTS GTNLTAYDVV QKYKLPRGIL PEGVIDYDLN 600 PKTGFFKVYL NNTCRFPIEV YKVKYQPIVS GFIKNGRVSR LKGVSVKVLY FWLSIGEVTS 660 DGQELELSVG AASEEFSAHQ FARSPQCGCG FYCRELKFSS * 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02301 | PLN02301 | 7.0e-145 | 92 | 571 | 481 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02416 | PLN02416 | 4.0e-149 | 24 | 571 | 556 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 0 | 21 | 571 | 552 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 0 | 29 | 571 | 549 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| pfam01095 | Pectinesterase | 0 | 260 | 555 | 297 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL87311.1 | 0 | 1 | 571 | 1 | 570 | unknown protein [Arabidopsis thaliana] |
| DDBJ | BAF00855.1 | 0 | 1 | 571 | 1 | 576 | hypothetical protein [Arabidopsis thaliana] |
| RefSeq | NP_563662.1 | 0 | 1 | 571 | 1 | 576 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567227.1 | 0 | 1 | 571 | 1 | 570 | ATPMEPCRB; pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002523112.1 | 0 | 14 | 571 | 23 | 564 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 262 | 571 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 260 | 571 | 9 | 318 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3uw0_A | 4e-18 | 270 | 429 | 44 | 220 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 4e-16 | 270 | 481 | 18 | 245 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 4e-16 | 270 | 481 | 18 | 245 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
