| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra033564 |
| Family | AA1 |
| Protein Properties | Length: 640 Molecular Weight: 72031.3 Isoelectric Point: 9.4718 |
| Chromosome | Chromosome/Scaffold: 06 Start: 26208757 End: 26213482 |
| Description | SKU5 similar 9 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 132 | 592 | 0 |
| LGIPQRGILINGQFPGPEIYSVTNDNLIINVHNDLDEPFLLSWNGVQLRKNSYQDGVYGTTCPIPPGKNYTYAIQVKDQIGSFFYFPSLAFHKAAGAFGG LRVLSRPRIPVPFPEPAGDFTFLIGDWYSQHDHKNLKALLDRGHRLPFPDKVLINGNGVNFSSSLTVHKGKTYRFRISNVGLQHSLNFKIVDHQMKLVEV EGTHTIQSMYSSLDIHVGQSYSVLVTMDQPEKDYSIVVATRFAAKKILVGSTLHYSNSRQSLSSASLSARGPADELDWSIKQARSIRTNLTASGPRPNPQ GSYHYGLINISRTLVLESSAGLVKRKQRYAINGVSFVHSDTPLKLADYFNIRGVFKVGSIPDQPRRGGGIRLDTAVMGANHRAFIEIVFQNREKIVQSYH LDGYSFWVVGMDRGTWSHASRREYNLVDAVSRSTTQVYPESWTAVYVALDNVGMWNLRSEF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 640 Download |
| MYFFALLIEY RGPPTPSIHW SAQRRTADYS RASEQQEADS AASKGCGIFE FLKKKPEDVP 60 SSDVTKENKG EEKPSLAERI HLFDSSSSSD EESGENGEVK EKKRKKAEGE VQAEDPYRFF 120 DWRVTYGNIY PLGIPQRGIL INGQFPGPEI YSVTNDNLII NVHNDLDEPF LLSWNGVQLR 180 KNSYQDGVYG TTCPIPPGKN YTYAIQVKDQ IGSFFYFPSL AFHKAAGAFG GLRVLSRPRI 240 PVPFPEPAGD FTFLIGDWYS QHDHKNLKAL LDRGHRLPFP DKVLINGNGV NFSSSLTVHK 300 GKTYRFRISN VGLQHSLNFK IVDHQMKLVE VEGTHTIQSM YSSLDIHVGQ SYSVLVTMDQ 360 PEKDYSIVVA TRFAAKKILV GSTLHYSNSR QSLSSASLSA RGPADELDWS IKQARSIRTN 420 LTASGPRPNP QGSYHYGLIN ISRTLVLESS AGLVKRKQRY AINGVSFVHS DTPLKLADYF 480 NIRGVFKVGS IPDQPRRGGG IRLDTAVMGA NHRAFIEIVF QNREKIVQSY HLDGYSFWVV 540 GMDRGTWSHA SRREYNLVDA VSRSTTQVYP ESWTAVYVAL DNVGMWNLRS EFWARQYLGQ 600 QLYLRVYSSV HSLRDEYLVP KNALLCGRAS NMQRPIITP* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02792 | PLN02792 | 0 | 111 | 639 | 530 | + oxidoreductase | ||
| PLN02991 | PLN02991 | 0 | 111 | 634 | 524 | + oxidoreductase | ||
| PLN02835 | PLN02835 | 0 | 111 | 629 | 519 | + oxidoreductase | ||
| PLN02354 | PLN02354 | 0 | 111 | 635 | 539 | + copper ion binding / oxidoreductase | ||
| PLN02168 | PLN02168 | 0 | 116 | 630 | 526 | + copper ion binding / pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB37498.1 | 0 | 111 | 631 | 23 | 543 | putative pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_194538.1 | 0 | 111 | 639 | 22 | 547 | sks10 (SKU5 Similar 10); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_195555.2 | 0 | 111 | 631 | 23 | 544 | sks9 (SKU5 Similar 9); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | XP_002282214.1 | 0 | 111 | 630 | 21 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002528421.1 | 0 | 111 | 636 | 23 | 544 | multicopper oxidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 118 | 627 | 4 | 539 | A Chain A, Crystal Structure Of Amidohydrolase Saro_0799 (target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 With Bound Calcium |
| PDB | 1asq_A | 0 | 118 | 627 | 4 | 539 | A Chain A, Crystal Structure Of Amidohydrolase Saro_0799 (target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 With Bound Calcium |
| PDB | 1asp_B | 0 | 118 | 627 | 4 | 539 | A Chain A, Crystal Structure Of Amidohydrolase Saro_0799 (target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 With Bound Calcium |
| PDB | 1asp_A | 0 | 118 | 627 | 4 | 539 | A Chain A, Crystal Structure Of Amidohydrolase Saro_0799 (target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 With Bound Calcium |
| PDB | 1aso_B | 0 | 118 | 627 | 4 | 539 | A Chain A, Crystal Structure Of Amidohydrolase Saro_0799 (target Efi-505250) From Novosphingobium Aromaticivorans Dsm 12444 With Bound Calcium |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY262568 | 347 | 149 | 495 | 0 |
| HO801725 | 439 | 191 | 629 | 0 |
| EC919612 | 306 | 136 | 441 | 0 |
| EG513995 | 278 | 355 | 630 | 0 |
| EG513995 | 26 | 330 | 355 | 0.00005 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
