| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra033792 |
| Family | CE8 |
| Protein Properties | Length: 594 Molecular Weight: 65523.4 Isoelectric Point: 10.5776 |
| Chromosome | Chromosome/Scaffold: 01 Start: 14183081 End: 14187171 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 280 | 577 | 0 |
| LVVAQDRSGHFRSIQAAINFAGRRRIKSRFVIYVKKGVYRENIEVGNDNHNIMLVGDGERKTIITSARSVKGGYTTYNSATAGFGGQRFVAKDMTFINTA GPLRGQAVSVRSSSDLSVFYRVGIHGFQDTLFIHSQRQFFRECYISGTIDFIFGNAAVVFQNCMILVRRPLHGQANVITAQGRGDPFQNTGITIHSSRIV AASDLRPVIRAYKTYLGRPWQAYSRVTIMKTYIDNSISPLGWSPWLRGSNFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAITNAAVASRFTVGSLIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 594 Download |
| MVRGIFHICL LASFLLLPQF SSTVNYRGFT VGANVPSPWD HNIPPPPETT PFASPTTSPP 60 TTSAQSPGPA AASSPINNSS ISGDMTWWCN KTPHAKTCTY YFQKSPDRNI SRPPRFRSEF 120 LRMLVHVALD QAVIAHAQTV KLGQSCTNNQ QKGAWSDCVT LFENTVTQLN QTFNGLNPGA 180 SSDVKCSDFD AQTWLSTAQT NIQTCRSGAE DLKVSNFVMP AISNKNLSDL IGNCLAVNGV 240 LMKQHNHKTA NHKEYFPSWV SRHERRLLVS ASLAKSRPHL VVAQDRSGHF RSIQAAINFA 300 GRRRIKSRFV IYVKKGVYRE NIEVGNDNHN IMLVGDGERK TIITSARSVK GGYTTYNSAT 360 AGFGGQRFVA KDMTFINTAG PLRGQAVSVR SSSDLSVFYR VGIHGFQDTL FIHSQRQFFR 420 ECYISGTIDF IFGNAAVVFQ NCMILVRRPL HGQANVITAQ GRGDPFQNTG ITIHSSRIVA 480 ASDLRPVIRA YKTYLGRPWQ AYSRVTIMKT YIDNSISPLG WSPWLRGSNF ALNTVFYGEY 540 KNFGPGSSTR WRVRWKGFHA ITNAAVASRF TVGSLIAGGS WLPSTGVPFK TGL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 3.0e-141 | 124 | 593 | 492 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 2.0e-142 | 77 | 593 | 529 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 4.0e-149 | 152 | 593 | 445 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 2.0e-159 | 279 | 578 | 300 | + Pectinesterase. | ||
| PLN02995 | PLN02995 | 0 | 82 | 593 | 515 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_190324.1 | 0 | 1 | 593 | 1 | 594 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002264861.1 | 0 | 83 | 593 | 28 | 523 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
| RefSeq | XP_002318284.1 | 0 | 80 | 593 | 25 | 527 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322402.1 | 0 | 80 | 593 | 25 | 524 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002510939.1 | 0 | 84 | 593 | 30 | 526 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 278 | 593 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 281 | 593 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 2e-20 | 309 | 584 | 35 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 2e-20 | 309 | 584 | 35 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 2e-20 | 309 | 584 | 35 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
