| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra033795 |
| Family | GH3 |
| Protein Properties | Length: 563 Molecular Weight: 61832.4 Isoelectric Point: 4.8932 |
| Chromosome | Chromosome/Scaffold: 01 Start: 14119239 End: 14121818 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 60 | 280 | 0 |
| LASRLGIPIIYGIDAVHGNNNVYGATIFPHNIGLGATRDADLIRRIGAATALEVRAMGAHWAFAPCVAALRNPRWGRSYECYSEDANTICELLSRAFKES HPKNTLMVTLFLREDGGTENGTNEGNTIVSFEDLERIHLPPYLNCLSQGVSTVMASYSSWNGSKLHSNYFLLTELLKQKLGFKGFIISDWEALDRLSEPF GSNCRNCVKISINAGIDMVMV | |||
| Full Sequence |
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| Protein Sequence Length: 563 Download |
| MSLAEKIGQM TQIERVVTTR TVITNSFIGS VLNGGGSWPF EDARPSDWAD MIDGYQNAAL 60 ASRLGIPIIY GIDAVHGNNN VYGATIFPHN IGLGATRDAD LIRRIGAATA LEVRAMGAHW 120 AFAPCVAALR NPRWGRSYEC YSEDANTICE LLSRAFKESH PKNTLMVTLF LREDGGTENG 180 TNEGNTIVSF EDLERIHLPP YLNCLSQGVS TVMASYSSWN GSKLHSNYFL LTELLKQKLG 240 FKGFIISDWE ALDRLSEPFG SNCRNCVKIS INAGIDMVMV PFKYERFIHD LTDLVQSGEV 300 PMARIDDAVE RILRVKFVAG LFEHPLTDRS LLGTVGCTEH RELGREAVRK SLVLLKNGKH 360 VDKPFLPLDR NAKRILVTGT HADDLGYQCG GWTKAWFGLS GRITIGTTLL DAIKAIVGDQ 420 TEVIYEKYPS EESLASSEGF SYAIVAVGES PYAETLGDNS ELIIPFNGSD IVTTVAERIP 480 TLMILFSGRP MVLEPTVLEK TEAVVSAWLP GSEGQGMADV IFGDYDFEGK LPVSWFKRVE 540 QLPLNADADL YDPLFPLGFG LN* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03080 | PLN03080 | 2.0e-40 | 57 | 551 | 559 | + Probable beta-xylosidase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-49 | 352 | 562 | 228 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 1.0e-71 | 2 | 315 | 323 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 2.0e-73 | 1 | 561 | 638 | + beta-D-glucoside glucohydrolase; Provisional | ||
| COG1472 | BglX | 8.0e-77 | 1 | 417 | 429 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY25449.1 | 0 | 1 | 561 | 1 | 576 | At3g47010 [Arabidopsis thaliana] |
| RefSeq | NP_190284.1 | 0 | 1 | 562 | 28 | 604 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190285.3 | 0 | 1 | 561 | 29 | 604 | hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_190288.1 | 0 | 1 | 562 | 28 | 629 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190289.1 | 0 | 1 | 562 | 28 | 602 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1j8v_A | 0 | 1 | 561 | 23 | 597 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1iex_A | 0 | 1 | 561 | 23 | 597 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1iew_A | 0 | 1 | 561 | 23 | 597 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1iev_A | 0 | 1 | 561 | 23 | 597 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ieq_A | 0 | 1 | 561 | 23 | 597 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES901611 | 273 | 243 | 515 | 0 |
| EX134175 | 292 | 271 | 562 | 0 |
| EW737295 | 252 | 311 | 562 | 0 |
| EG452967 | 264 | 213 | 476 | 0 |
| HO795479 | 323 | 241 | 562 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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