| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra033980 |
| Family | PL1 |
| Protein Properties | Length: 407 Molecular Weight: 44730.7 Isoelectric Point: 8.6511 |
| Chromosome | Chromosome/Scaffold: 02 Start: 10473842 End: 10475331 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 121 | 325 | 0 |
| QDEPLWIIFARDMVIKLKEELLMNSFKTIDGRGANVHIAGGACITAQYVTNIIIHGINIHDCKKRGNAYVRDSPSHYGWRTASDGDAISIFGGSHVWVDH CSLSNCADGLVDAIHGSTAITISNNYLTHHNKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINSQG NRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 407 Download |
| MTLLHLSLSL FSCLLLVLGP TFIDSAHVSD PELVVQEVNQ KINASRRNLG VLSCGTGNPI 60 DDCWRCDKKW EKNRQRLADC AIGFGKHAIG GRDGKIYVVT DPSDKDVVNP KPGTLRHAVI 120 QDEPLWIIFA RDMVIKLKEE LLMNSFKTID GRGANVHIAG GACITAQYVT NIIIHGINIH 180 DCKKRGNAYV RDSPSHYGWR TASDGDAISI FGGSHVWVDH CSLSNCADGL VDAIHGSTAI 240 TISNNYLTHH NKVMLLGHSD SYTRDKNMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWQMYAIGG SAAPTINSQG NRFLAPNDHV FKEVTRYEDA PQSKWKKWNW RSEGDLFLNG 360 AFFTPAGGRA SSSYAKASSL SARPSSLVAS VTGNAGALYC KKGSRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-26 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-72 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-80 | 132 | 327 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG28907.1 | 0 | 33 | 406 | 19 | 392 | AC008113_23 F12A21.12 [Arabidopsis thaliana] |
| GenBank | AAM67091.1 | 0 | 1 | 406 | 1 | 406 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CBI14899.1 | 0 | 20 | 406 | 17 | 403 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_564906.1 | 0 | 1 | 406 | 3 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002275781.1 | 0 | 20 | 406 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 58 | 398 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 58 | 398 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 127 | 325 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 3e-16 | 148 | 300 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 3krg_A | 4e-16 | 148 | 300 | 130 | 295 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
