| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034008 |
| Family | AA5 |
| Protein Properties | Length: 525 Molecular Weight: 58053.9 Isoelectric Point: 8.9983 |
| Chromosome | Chromosome/Scaffold: 02 Start: 10246964 End: 10248891 |
| Description | glyoxal oxidase-related protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA5 | 5 | 523 | 0 |
| GKWELFLKSSGVSAMHAILLPLINKVQFYDATIWRISQIKLPPGVPCHVFDHVHNKVDCWAHSVLIDIESGHIRPLSLTTDTWCSSGGLTINGTLVSTGG FQGGANTARYLASCDNCNWVEYPKALAAQRWYSTQATLPDGTFIVVGGRQALNYEYILPEGMDNKKLYDSHLLKETTDREENNLYPFVWLNTDGNLFMFA NNRSILLSPKTNKVIKEFPQLPGGARNYPGSASSALLPIRLYVNNPPVIPADVLICGGARQDGYFRADRLKLFDPALNDCARISLNSRRPAWKTEKMPAP RVMSDTVVLPNGEVLIINGAKHGTSGWGLAKDPNFTPLLYTPNKPIGKRFKELAASTIPRMYHSIAIALPDGKVLIGGSNTNDGYRYDVEYPTELRIEKF SPPYLDPALANMRPKIVHTDTPKQIKFGQTFNVKIELKQANVAKENVMVTMLAPPFTTHAVSMNMRLLLLGISDVKKEHGDVHQIQAVAPPSGNVAPPGY YLLYAVYNGVPSVGEWIQI | |||
| Full Sequence |
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| Protein Sequence Length: 525 Download |
| MNWPGKWELF LKSSGVSAMH AILLPLINKV QFYDATIWRI SQIKLPPGVP CHVFDHVHNK 60 VDCWAHSVLI DIESGHIRPL SLTTDTWCSS GGLTINGTLV STGGFQGGAN TARYLASCDN 120 CNWVEYPKAL AAQRWYSTQA TLPDGTFIVV GGRQALNYEY ILPEGMDNKK LYDSHLLKET 180 TDREENNLYP FVWLNTDGNL FMFANNRSIL LSPKTNKVIK EFPQLPGGAR NYPGSASSAL 240 LPIRLYVNNP PVIPADVLIC GGARQDGYFR ADRLKLFDPA LNDCARISLN SRRPAWKTEK 300 MPAPRVMSDT VVLPNGEVLI INGAKHGTSG WGLAKDPNFT PLLYTPNKPI GKRFKELAAS 360 TIPRMYHSIA IALPDGKVLI GGSNTNDGYR YDVEYPTELR IEKFSPPYLD PALANMRPKI 420 VHTDTPKQIK FGQTFNVKIE LKQANVAKEN VMVTMLAPPF TTHAVSMNMR LLLLGISDVK 480 KEHGDVHQIQ AVAPPSGNVA PPGYYLLYAV YNGVPSVGEW IQIV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam09118 | DUF1929 | 2.0e-26 | 417 | 523 | 108 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
| cd02851 | E_set_GO_C | 4.0e-30 | 417 | 523 | 108 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
| pfam07250 | Glyoxal_oxid_N | 2.0e-115 | 19 | 262 | 249 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL84955.1 | 0 | 3 | 524 | 75 | 594 | AT5g19580/T20D1_100 [Arabidopsis thaliana] |
| RefSeq | NP_176897.1 | 0 | 1 | 524 | 92 | 615 | glyoxal oxidase-related [Arabidopsis thaliana] |
| RefSeq | NP_197459.1 | 0 | 3 | 524 | 75 | 594 | glyoxal oxidase-related [Arabidopsis thaliana] |
| RefSeq | XP_002324431.1 | 0 | 5 | 523 | 2 | 521 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331167.1 | 0 | 5 | 523 | 89 | 608 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2eib_A | 9e-17 | 85 | 524 | 225 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
| PDB | 2eid_A | 2e-16 | 85 | 524 | 225 | 638 | A Chain A, Galactose Oxidase W290g Mutant |
| PDB | 1k3i_A | 2e-16 | 85 | 524 | 242 | 655 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
| PDB | 2wq8_A | 2e-16 | 85 | 524 | 247 | 660 | A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution |
| PDB | 2vz3_A | 2e-16 | 85 | 524 | 225 | 638 | A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR454888 | 252 | 274 | 525 | 0 |
| GR458995 | 273 | 14 | 286 | 0 |
| GR458911 | 278 | 62 | 339 | 0 |
| FD563493 | 250 | 66 | 312 | 0 |
| CX195136 | 284 | 91 | 374 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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